PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35400.1.p
Common NameBRADI_4g35400, LOC100827921
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 320aa    MW: 33573.5 Da    PI: 6.5972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12139184454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Bradi4g35400.1.p 139 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 184
                       89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15137201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-10138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-12138189No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15139198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDELLSPCSS FFAPPSPPSN DFSPAGHGQY HQQQQVLEFA SCDVPEQWLL GDIYVSSAKS  60
EDNGDDYGNL MTWPHAAAGC SLSPGSDLSD LPAAAPHSTV GSSCVVLPAS STPHRAGPAT  120
AAKRRGRKPG PRPEGPTVSH VEAERQRRDK LNRRFCDLRA AVPTVSRMDK ASLLADAAAY  180
IAELRARVAR LEDEGRQAAA ARWPPDATTT TSGAAASAAV PHFPADETAA AVEVRMVGRE  240
AAAVRVTTAA AHAPARLMGA LRALELQVQH ACVSRVQGVT VQDVVVDVPA VLRQQQQQGD  300
DGGGALRSAL LQRLQDSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-18138197766Transcription factor MYC2
5gnj_B2e-18138197766Transcription factor MYC2
5gnj_E2e-18138197766Transcription factor MYC2
5gnj_F2e-18138197766Transcription factor MYC2
5gnj_G2e-18138197766Transcription factor MYC2
5gnj_I2e-18138197766Transcription factor MYC2
5gnj_M2e-18138197766Transcription factor MYC2
5gnj_N2e-18138197766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065257e-78AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072547e-78AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149657e-78AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126177e-78CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576740.10.0transcription factor MYC2
TrEMBLI1IRX40.0I1IRX4_BRADI; Uncharacterized protein
STRINGBRADI4G35400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1312745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-10bHLH family protein