PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g34157.1.p
Common NameBRADI_4g34157, LOC100836586
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 355aa    MW: 39191.4 Da    PI: 9.6149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g34157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1775.3e-55271571128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelv++yL+ k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++
  Bradi4g34157.1.p  27 LPPGFRFHPTDEELVTYYLRGKIADGSFTA-RAITEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIF 118
                       79*************************999.89***************99999**************************************** PP

               NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +     ++el g+kktLvfykgrap+gek++Wvmheyrl
  Bradi4g34157.1.p 119 TGqppsTQELAGMKKTLVFYKGRAPRGEKSNWVMHEYRL 157
                       9888888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6324178IPR003441NAC domain
PROSITE profilePS5100560.12527178IPR003441NAC domain
PfamPF023651.5E-2828157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEGSGGGGGG LVSKKKQDDS KKKEESLPPG FRFHPTDEEL VTYYLRGKIA DGSFTARAIT  60
EVDLNKCEPW DLPEKAKMGE KEWYFFSLRD RKYPTGVRTN RATNAGYWKT TGKDKEIFTG  120
QPPSTQELAG MKKTLVFYKG RAPRGEKSNW VMHEYRLHSK PGSKSNKDEW VVCRIFAKTP  180
GVKKYPPNNA HTRPHHPYTL DMVPQLLPAL MQHDLFARGH HPYMTPADLV ELSRFARGTP  240
GLHPHIQPHP GYMNPSASFT LSNLNLNLGA PSPATGMPPQ HALHAMSMNQ TNATNQGYQV  300
TPAEHMAPGL GNYVIPPNGG DGGFGAGTTM GGTSIRYQNL DVDQLVEKCW PGSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-532618416171NO APICAL MERISTEM PROTEIN
1ut4_B1e-532618416171NO APICAL MERISTEM PROTEIN
1ut7_A1e-532618416171NO APICAL MERISTEM PROTEIN
1ut7_B1e-532618416171NO APICAL MERISTEM PROTEIN
3swm_A2e-532618419174NAC domain-containing protein 19
3swm_B2e-532618419174NAC domain-containing protein 19
3swm_C2e-532618419174NAC domain-containing protein 19
3swm_D2e-532618419174NAC domain-containing protein 19
3swp_A2e-532618419174NAC domain-containing protein 19
3swp_B2e-532618419174NAC domain-containing protein 19
3swp_C2e-532618419174NAC domain-containing protein 19
3swp_D2e-532618419174NAC domain-containing protein 19
4dul_A1e-532618416171NAC domain-containing protein 19
4dul_B1e-532618416171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g34157.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238320.10.0NAC domain-containing protein 92
TrEMBLI1IRF70.0I1IRF7_BRADI; Uncharacterized protein
STRINGBRADI4G34157.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-89NAC domain containing protein 38