PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g33740.1.p | ||||||||
Common Name | BRADI_4g33740, LOC100831675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 530aa MW: 58467.6 Da PI: 7.1257 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.3 | 2.4e-11 | 210 | 242 | 1 | 33 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee 33 e++ k rr+++NReAAr+sR+RKka+i++Le Bradi4g33740.1.p 210 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLES 242 6777999************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.4E-8 | 208 | 255 | No hit | No description |
SMART | SM00338 | 1.9E-6 | 210 | 299 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.2E-8 | 211 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.002 | 212 | 254 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.75E-7 | 214 | 254 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 217 | 232 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.9E-28 | 308 | 381 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MMSAAGSQSQ QQEIIRQHQQ QQQEMEMNIS FGMSSQHHSL HHHAPPSSSS SSSMHAAAAA 60 SFMSAKEAAA ASGAYDQLGD LDQALFMYLD HGHGSQHASA HHQEQRQTLN IFPSQPMHVE 120 PSPKGEISLA VLSPAPVGSK MPRSSPDHHQ HQHQLQQAAM EELAGSRRQQ EHHLAVQQQH 180 QQPFAAEPAG VSKDVKPLAK KDKRGLSTSE RDPKTLRRLA QNREAARKSR LRKKAYIQQL 240 ESSRIRLAQI EQELHSARAQ GVFFPGSGLL TEQGVTGKGL GGIDGLSSEA AMFDVEYGRW 300 QEEHYRVMYE LRAALQQQLP EGELQMYVEN CLAHHDEVVA IKDAVIKGDV FHLTSGVWRS 360 PAERCFLWLG GFRPSEVIKM VLGHVEPLAE QQIVAVYGLQ QSAAETEEAL SQGLDALYQS 420 LSDTVVSDAL SCPPANVANY MGQMHVAMNK LSTLEGFVRQ AENLRQQTLH RLHQVLTTRQ 480 MARSLLAVSD YFHRLRTLSS LWVTRPRPPP QDHQQPGDGA GAGGTPHSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g33740.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366660 | 0.0 | AK366660.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2045H07. | |||
GenBank | AK375651 | 0.0 | AK375651.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3100G14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238296.1 | 0.0 | transcription factor TGA2.2 isoform X1 | ||||
Swissprot | Q52MZ2 | 1e-164 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | I1IR94 | 0.0 | I1IR94_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G33740.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7876 | 35 | 43 | Representative plant | OGRP7516 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-140 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g33740.1.p |
Entrez Gene | 100831675 |