PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g32920.1.p

Common Name

BRADI_4g32920, LOC100843197

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 189aa MW: 21270.4 Da PI: 7.297

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g32920.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	84	136	1	53
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 e+e +r rr+ +NRe+ArrsR RK+ ++ eL v L + N++L +el++ Bradi4g32920.1.p 84 EEEERRRRRMVSNRESARRSRVRKQRQLSELWAQVLHLRGANRRLLDELNQAM 136 67889*****************************************9999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-8	83	134	No hit	No description
Pfam	PF00170	3.9E-9	84	140	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.7E-11	84	148	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.519	86	149	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-10	88	136	No hit	No description
PROSITE pattern	PS00036	0	91	106	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.81E-12	93	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MLHHYHGEVA SLHCLTPPNP PLFHTHYQSS MITMTPPSFQ FSAAAYDDDE PVQEALAAAI 60 SNNSSARSGG AAGDTDIHGR AAAEEEERRR RRMVSNRESA RRSRVRKQRQ LSELWAQVLH 120 LRGANRRLLD ELNQAMRGRD DVRRENDRLS DEKAELEARL QQYLMQAQEN NNTPSSSSSY 180 KITATATE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	106	RRSRVRK
2	100	107	RRSRVRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g32920.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576641.1	1e-137	bZIP transcription factor 11
TrEMBL	I1IQZ9	1e-136	I1IQZ9_BRADI; Uncharacterized protein
STRING	BRADI4G32920.1	1e-137	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1186	35	126
Representative plant	OGRP13120	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	4e-11	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Bradi4g32920.1.p
Entrez Gene	100843197