PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g30350.7.p | ||||||||
Common Name | BRADI_4g30350, LOC100826168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 34001.9 Da PI: 7.3955 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.1e-12 | 260 | 305 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Bradi4g30350.7.p 260 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 305 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.19E-13 | 253 | 309 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-17 | 253 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 255 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 257 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 260 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MQPTTRELQA MAAAAAGAGQ ISMGDLRNNG HAGPGGANGG GGGVHDDFLD QMFGSLPPSA 60 WHELATAAAA AKPPEDDSGM QQQQQFGGPY DESVMLASRL RQNQISGGGG PGSGAGGAAK 120 QMVLQQLADL RQAGHGHGHH MMLQGGTGRG DSGMILPLTL GNGGSGGDVQ ALLKAAANSA 180 GGEAGVFGGF AGSLQQQQQH FQPHPQQQTA PMPNQTFGGG AASGGGAQPQ AGAGGGGGGG 240 TQAPPRQRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY 300 VKFLQLQVKV LSMSRLGGAA AVAPLVADMS SECATA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 269 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g30350.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062076 | 5e-82 | BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds. | |||
GenBank | KJ727938 | 5e-82 | KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238168.1 | 0.0 | transcription factor bHLH66 isoform X1 | ||||
TrEMBL | A0A2K2CRB4 | 0.0 | A0A2K2CRB4_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G30350.1 | 1e-155 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-21 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g30350.7.p |
Entrez Gene | 100826168 |