PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g30350.5.p | ||||||||
Common Name | BRADI_4g30350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 34447.4 Da PI: 7.3955 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.4e-11 | 260 | 308 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq Bradi4g30350.5.p 260 HSIAERLRRERIAERMKALQELVPNA--NKWMQTDKASMLDEIIDYVKFLQ 308 99***********************7..48888*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-17 | 253 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.69E-14 | 253 | 312 | No hit | No description |
PROSITE profile | PS50888 | 16.463 | 255 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 259 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-9 | 260 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-12 | 261 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MQPTTRELQA MAAAAAGAGQ ISMGDLRNNG HAGPGGANGG GGGVHDDFLD QMFGSLPPSA 60 WHELATAAAA AKPPEDDSGM QQQQQFGGPY DESVMLASRL RQNQISGGGG PGSGAGGAAK 120 QMVLQQLADL RQAGHGHGHH MMLQGGTGRG DSGMILPLTL GNGGSGGDVQ ALLKAAANSA 180 GGEAGVFGGF AGSLQQQQQH FQPHPQQQTA PMPNQTFGGG AASGGGAQPQ AGAGGGGGGG 240 TQAPPRQRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKWMQ TDKASMLDEI 300 IDYVKFLQLQ VKVLSMSRLG GAAAVAPLVA DMSSECATA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 264 | 269 | RLRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g30350.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238168.1 | 1e-158 | transcription factor bHLH66 isoform X1 | ||||
TrEMBL | A0A2K2CRB8 | 0.0 | A0A2K2CRB8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G30350.1 | 1e-160 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24260.1 | 9e-20 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g30350.5.p |