PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g28280.1.p
Common NameBRADI_4g28280, LOC100840042
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 326aa    MW: 35041.5 Da    PI: 6.931
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g28280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.46.1e-28115174258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+rs+edp++++++Y+g+H++
  Bradi4g28280.1.p 115 DDGHSWRKYGQKEILGAKHPRGYYRCTHRktlGCAATKQVQRSDEDPTLFDVIYHGDHTC 174
                       7***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.251109172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-27110174IPR003657WRKY domain
SuperFamilySSF1182902.48E-24111174IPR003657WRKY domain
SMARTSM007742.2E-38114176IPR003657WRKY domain
PfamPF031064.3E-27115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MECVDSNGGS RLVVTELSLI KELVKQLDVN LGGSPELCKR LAAQIFSVTE RSIGMIKSGH  60
FGKRSAGLDS PTPSPLKGVS DMTFKPNKKR KTMERRKQQV RVIPSGEGAD TPVGDDGHSW  120
RKYGQKEILG AKHPRGYYRC THRKTLGCAA TKQVQRSDED PTLFDVIYHG DHTCLLHKTA  180
GANKAQPEEP QNPEEALRLL QSLTVETEGL AAMAGPQSWS TTTTTPFSFS SPAPPPPQER  240
YSKFSAPSTP DDCCFGRGVS VELSPATSGG SSHLAMAAPF RAQSEMDKMV SALALVASAE  300
PAAAFSIDEF DGFGLDDFDV SSFFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21115174968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g28280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770667e-78AK377066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576431.10.0WRKY transcription factor 6
TrEMBLI1IPG00.0I1IPG0_BRADI; Uncharacterized protein
STRINGBRADI4G28280.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-36WRKY DNA-binding protein 46