PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g24550.2.p

Common Name

BRADI_4g24550, LOC104585056

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 310aa MW: 32216 Da PI: 10.3616

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g24550.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.4	5.2e-38	67	177	1	105
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 aa+k+ ++ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++t+eWLl+qa+pai ++tg+++ +a+++ a+s + s+++s ++ Bradi4g24550.2.p 67 AAAKRPPSRDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKTDGETVEWLLKQAEPAILDATGSGTVPANFSsIAASLRPSNHSSMAPmlgs 159 5899*************************************************************9999988855555555555444446654 PP TCP 89 ....kaaksaa.kskksqksaa 105 + ++++ q++a Bradi4g24550.2.p 160 fpahG----HGpQQQELQDPAM 177 32220....2212233333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-34	74	173	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.481	74	128	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEQGAAPPSS TSNPHPHPQH HHQFYYVPPP PPPSLAMTAP AAAGGQPSSS STALAVPEAG 60 KKAVVAAAAK RPPSRDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKTD GETVEWLLKQ 120 AEPAILDATG SGTVPANFSS IAASLRPSNH SSMAPMLGSF PAHGHGPQQQ ELQDPAMRKR 180 NYMEEEGGIF KVEGVHEKKP RMEMGQQMAM APMSAPGAIT GPMSSAWAGG AFWMQPMYGG 240 AGSGGSSSSN AAPRQFMASR SGGGAMAGDT SLGMFNHSYS GRSTGGEQQN QNQQGRPGSS 300 NGGGGARQQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g24550.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239285.1	0.0	transcription factor PCF3
TrEMBL	A0A0Q3HM36	0.0	A0A0Q3HM36_BRADI; Uncharacterized protein
STRING	BRADI4G24550.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69
Representative plant	OGRP4591	10	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	8e-41	TCP family protein

Link Out ? help Back to Top
Phytozome	Bradi4g24550.2.p
Entrez Gene	104585056