PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g24203.1.p | ||||||||
Common Name | BRADI_4g24203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 374aa MW: 40726.9 Da PI: 8.8406 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.3 | 3.1e-14 | 27 | 118 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...........EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy.........rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + +p +f+++h +++ + tl ++ + W v + +++++GW eFv+ ngL+e f+vF+++g++ f +v Bradi4g24203.1.p 27 TMPIPARFVRRHLAAEPGLRRATLVSPLKKFWHVDVARddvdgnghgH----DddgdVYFAGGWAEFVRVNGLEEENFLVFRYEGNMVF--TV 113 478*********666678889***************888887655433....14466********************************..9* PP EEE-S CS B3 95 kvfrk 99 kvf++ Bradi4g24203.1.p 114 KVFDT 118 *9997 PP | |||||||
2 | B3 | 46 | 9.7e-15 | 294 | 368 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + kkf+ ++g+++++ ++++d+ grsW vkl + +s++ +++GW + ++ +++k+gD+++F+l++ ++f ++++++ Bradi4g24203.1.p 294 IGKKFCMANGIVTNR--LMIIKDSVGRSWPVKL--TLTSDQARMKAGWGHIASHHRIKVGDICIFHLVDPQTF--NISIRQ 368 889*******99655..7999************..99999999***********************9986666..887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-20 | 11 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-20 | 12 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.294 | 13 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.55E-17 | 14 | 117 | No hit | No description |
SMART | SM01019 | 2.8E-7 | 16 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-11 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-15 | 273 | 369 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0047 | 283 | 370 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-16 | 291 | 368 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.3E-12 | 294 | 367 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.27E-11 | 294 | 367 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 310 | 370 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAADGGGRTK AGKPQFLKVL FADFMETMPI PARFVRRHLA AEPGLRRATL VSPLKKFWHV 60 DVARDDVDGN GHGHDDDGDV YFAGGWAEFV RVNGLEEENF LVFRYEGNMV FTVKVFDTSG 120 CIKEYRGDQA GAGAAASVEK AARNQYDVAA GATASVEKTA APRNRYDVGV VATASVEKTA 180 PPSNRHDVAA STSVEKPVPR NWCDGATGCG SQPASRSHGG THAHKNRKIK EGKRSGDDDN 240 QAKKQCKSPR IWMEENNGEQ HAMADKCAQE DKHPEIAAVA KESEGTLPVY MKNIGKKFCM 300 ANGIVTNRLM IIKDSVGRSW PVKLTLTSDQ ARMKAGWGHI ASHHRIKVGD ICIFHLVDPQ 360 TFNISIRQTQ AEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g24203.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310373.1 | 2e-90 | putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | A0A0Q3PIN4 | 0.0 | A0A0Q3PIN4_BRADI; Uncharacterized protein | ||||
STRING | TRIUR3_06365-P1 | 1e-136 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 | Representative plant | OGRP10106 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 9e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g24203.1.p |