PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g16840.1.p | ||||||||
Common Name | BRADI_4g16840, LOC100823511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 256aa MW: 27925.1 Da PI: 5.2573 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 64.7 | 1.8e-20 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l rs++ + ++ +tl+ ++++v+r + fdfl++iv + Bradi4g16840.1.p 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYNITVQSGAKTLNSFHLKQCVKRYNSFDFLTEIVNK 86 579*************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.62E-21 | 3 | 106 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.7E-26 | 3 | 72 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRS YNITVQSGAK 60 TLNSFHLKQC VKRYNSFDFL TEIVNKVPDL GGADSCGDER GLPRRRKLSN ESDPENEEPR 120 SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEVGYVQFE DESSMFTEQS ESLPGDDAIP 180 ETKCGSESIP QSANPPADAP STGVPAAISK VEEASTNHQP DWPMPDAIGG IGVGPSSFGH 240 LTVQVDEDED YDNED* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-23 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 102 | 106 | PRRRK |
2 | 135 | 144 | RGRGRGRGRG |
3 | 135 | 145 | RGRGRGRGRGR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g16840.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM078730 | 0.0 | KM078730.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-B6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577492.1 | 0.0 | dr1-associated corepressor | ||||
TrEMBL | I1ILA7 | 0.0 | I1ILA7_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16840.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 | Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-52 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g16840.1.p |
Entrez Gene | 100823511 |