PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g16290.1.p | ||||||||
Common Name | BRADI_4g16290, LOC100838422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 30765.7 Da PI: 7.2026 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G+g+W++++++ g+ R+ k+c++rw +yl Bradi4g16290.1.p 16 KGPWTPEEDIVLVSYIQQHGPGNWRSVPEHTGLMRCSKSCRLRWTNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.2e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +++++ ++lG++ W++Ia++++ Rt++++k++w+++l Bradi4g16290.1.p 69 RGNFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 114 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.804 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-12 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 19.148 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.49E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRPPCCDNG GAGVKKGPWT PEEDIVLVSY IQQHGPGNWR SVPEHTGLMR CSKSCRLRWT 60 NYLRPGIKRG NFTPHEEGII IHLQALLGNK WAAIASYLPQ RTDNDIKNYW NTHLKKKVKR 120 LQQQTTHPAD HSFQQQTTTA PNAASATTSS NYYNPISSSN LEATTQAMAY RDTTPGSEVT 180 TIGTVSKLFQ TWMAKAPPPA VAQDYKAMVT MQEFQQDQEA RPAGFVITGD ITSHGEADQS 240 AAATFSLLEN WLLDDMAPGQ AAMDGLMDMS ASCCAGPIMF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-27 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g16290.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110844 | 1e-139 | AK110844.1 Oryza sativa Japonica Group cDNA clone:002-172-B09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577454.1 | 0.0 | transcription factor MYB30 | ||||
Swissprot | B3VTV7 | 1e-81 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | I1IL28 | 0.0 | I1IL28_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16290.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 6e-80 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g16290.1.p |
Entrez Gene | 100838422 |
Publications ? help Back to Top | |||
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