PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g14881.1.p | ||||||||
Common Name | BRADI_4g14881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20151.1 Da PI: 10.3394 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 79.7 | 4.8e-25 | 11 | 97 | 5 | 93 |
DUF260 5 CkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 Ck+lrr+C++ +apyf +e+ +++fa++hk+FGas+ kll++lp e+++a+ +++ eA+ r+rdPvyG+v+ i++lqqq +++k++ Bradi4g14881.1.p 11 CKFLRRRCVA---VAPYFSSEHgESRFAAIHKVFGASKAAKLLAHLPAAEHREAVVTITLEAQSRLRDPVYGCVAQIFALQQQQHCSKVD 97 ********95...8****999978***********************************************************9988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.007 | 6 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-24 | 11 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MRPGRSVLWL CKFLRRRCVA VAPYFSSEHG ESRFAAIHKV FGASKAAKLL AHLPAAEHRE 60 AVVTITLEAQ SRLRDPVYGC VAQIFALQQQ QHCSKVDGGE LQYLAQAMMR SSNYSGARAA 120 RPPLKAVAPA SPTTSSAVPS TSRPSLLASS GAVNLETHVY EAALAGVGDE GGVGGPVTRL 180 AVRWSAKAPT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-22 | 11 | 92 | 15 | 98 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-22 | 11 | 92 | 15 | 98 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g14881.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368515 | 8e-58 | AK368515.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075A19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3IP04 | 1e-135 | A0A0Q3IP04_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G14890.1 | 4e-81 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-27 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g14881.1.p |