PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g13586.1.p | ||||||||
Common Name | BRADI_4g13586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 22120.8 Da PI: 8.7084 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.6 | 1.3e-28 | 32 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgkdk 90 lp GfrF P+deel yL+kk+ + +l+ ++i+ +d+ ++P dLp + ++e +fFs+ + g+r+ r+++ +g+Wka+g+++ Bradi4g13586.1.p 32 LPIGFRFMPNDEELT-VYLRKKALSLPLPS-DIIPVADLAGIHPADLPG--GEAHEEKFFFSRPVPRC--GRRACRQAApgaAGVWKASGTEE 118 699***********9.8************9.99***************3..34567999**9998875..67777754435599*******99 PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+++ ++ v lk+tLvf+ + +g++t+Wvmheyrl Bradi4g13586.1.p 119 LVVVSpRHVPVALKQTLVFF---SADGTRTRWVMHEYRL 154 9988768888**********...78899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-36 | 22 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.693 | 32 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-17 | 33 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MLERACALLV LACVVQCVIM AMPQAGSEGL GLPIGFRFMP NDEELTVYLR KKALSLPLPS 60 DIIPVADLAG IHPADLPGGE AHEEKFFFSR PVPRCGRRAC RQAAPGAAGV WKASGTEELV 120 VVSPRHVPVA LKQTLVFFSA DGTRTRWVMH EYRLHPAMLA TAARIGKAVD NWVVCRVFKK 180 GTRRDGNLQD VFGPSSPASS CVTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-23 | 30 | 180 | 18 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g13586.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310836.1 | 1e-149 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0Q3EJB1 | 1e-148 | A0A0Q3EJB1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G48580.1 | 4e-73 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 8e-33 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g13586.1.p |