PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g13409.1.p

Common Name

BRADI_4g13409

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 354aa MW: 40129.6 Da PI: 7.3946

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g13409.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46	1.7e-14	117	196	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ evGF vr sk + + + + +++ vCs+ gk+ +++ + + r+gC a+++v + d++w++ + + HnH l+ Bradi4g13409.1.p 117 NFYNLYSWEVGFGVRLSKCRLTVHWK-KCMQEIVCSCAGKPMRDN---------NRSARCGCLAMIRVLRLGDNRWYICEHRDTHNHLLS 196 6***************99995555.77889***998865.........459****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-11	117	196	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDAAADIERA SLDCQPLGFD MNEPPVLQDQ AGSDNMENRG VATDIGQRGV LDPIGDISTE 60 GWRKRIRLGN APDERRPNPS RPCALEVAVR NYADRKTGEV VYPAIGMQFD SLDEAYNFYN 120 LYSWEVGFGV RLSKCRLTVH WKKCMQEIVC SCAGKPMRDN NRSARCGCLA MIRVLRLGDN 180 RWYICEHRDT HNHLLSSTCG EKLHWQPHRH MDKYTKELVK HLRENNVSLG KVYSIIGSFF 240 GSMENVPFTK RPLKALCGKI SRDQFDQDAV KTMEAFSAMQ DADLTFKYSV QIDDDSRIKT 300 LMWTSGRCIE KYACFGDVLS FDTTYRTNLY DMPFGLFVGV NNHFQSIILG GVS*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDAAADIERA SLDCQPLGFD MNEPPVLQDQ AGSDNMENRG VATDIGQRGV LDPIGDISTE  60
GWRKRIRLGN APDERRPNPS RPCALEVAVR NYADRKTGEV VYPAIGMQFD SLDEAYNFYN  120
LYSWEVGFGV RLSKCRLTVH WKKCMQEIVC SCAGKPMRDN NRSARCGCLA MIRVLRLGDN  180
RWYICEHRDT HNHLLSSTCG EKLHWQPHRH MDKYTKELVK HLRENNVSLG KVYSIIGSFF  240
GSMENVPFTK RPLKALCGKI SRDQFDQDAV KTMEAFSAMQ DADLTFKYSV QIDDDSRIKT  300
LMWTSGRCIE KYACFGDVLS FDTTYRTNLY DMPFGLFVGV NNHFQSIILG GVS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g13409.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753620.1	1e-162	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024313565.1	1e-162	putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0Q3ENC3	0.0	A0A0Q3ENC3_BRADI; Uncharacterized protein
STRING	Traes_2DL_01DEC201E.2	1e-146	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	3e-26	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Bradi4g13409.1.p