PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g08050.2.p | ||||||||
Common Name | BRADI_4g08050, LOC100841070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 47981.8 Da PI: 8.1357 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.7e-11 | 58 | 82 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p Bradi4g08050.2.p 58 EPDCSYYMRTGLCRFGMTCKFNHPP 82 789********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 103 | 127 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Bradi4g08050.2.p 103 QPECQYYLKTGTCKFGATCKFHHPR 127 799********************96 PP | |||||||
3 | zf-CCCH | 31 | 4.2e-10 | 149 | 173 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ Bradi4g08050.2.p 149 EKECAYYLRTGQCKFASTCKFHHPQ 173 679********************97 PP | |||||||
4 | zf-CCCH | 40 | 6.6e-13 | 310 | 335 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Bradi4g08050.2.p 310 DQPECQFYMKTGDCKFGAVCKFNHPK 335 689*********************96 PP | |||||||
5 | zf-CCCH | 37.5 | 3.9e-12 | 355 | 381 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ Bradi4g08050.2.p 355 PGEPVCTFYSRYGICKFGPNCKFDHPM 381 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.8E-5 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.281 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 58 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 60 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-4 | 61 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 106 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 311 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 314 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 354 | 381 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 354 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 356 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 359 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MAAAGAGSGG EGSSSPAALA IGTHHGPTED IAETMWQMSL GGGGESMEPG PYPERIGEPD 60 CSYYMRTGLC RFGMTCKFNH PPNRKLAVAA ARMNGEYPYR VGQPECQYYL KTGTCKFGAT 120 CKFHHPREKA AIATRAQLNV LGYPLRPNEK ECAYYLRTGQ CKFASTCKFH HPQPSSTMVA 180 VRGSMYSPGQ SATSPGQNTY PGAVTNWNMS RSASFIASPR WPGHSGYAQV IVPQSIVQVP 240 GWNPYAAQIG SSSPDDQQRT PGTTHYYSGS RQSETTGMGD HGMFPSYQAG SVPLGVYAVQ 300 GDNVFPERPD QPECQFYMKT GDCKFGAVCK FNHPKERMIP APNCALSPLG LPLRPGEPVC 360 TFYSRYGICK FGPNCKFDHP MGTVMYGSVT SPTSDVPTLH YQLAPSPGHS ERLLDGGGSG 420 RSHRVPQSDS QHIPTGDGST EREAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g08050.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237293.1 | 0.0 | zinc finger CCCH domain-containing protein 66 isoform X1 | ||||
Swissprot | Q2QT65 | 0.0 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A0Q3IKS4 | 0.0 | A0A0Q3IKS4_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G08050.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 | Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-146 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g08050.2.p |
Entrez Gene | 100841070 |
Publications ? help Back to Top | |||
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