PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g07527.1.p | ||||||||
Common Name | BRADI_4g07527, LOC100836791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 27326.9 Da PI: 9.4639 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.9 | 1e-45 | 16 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF+Ptdeelvv+yL++++ +++l+++ i++v+++ ++P+dL p +e+e yfF+++++ky +g r+nrat +gyWkatgk+k+v Bradi4g07527.1.p 16 LPPGFRFRPTDEELVVHYLRRRALSSPLPAAVDIPDVRLLAHDPSDLlP--PGWSEEERYFFTCKESKYVKGCRANRATGAGYWKATGKEKPV 106 79***************************9666**************43..34478999********************************** PP NAM 93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg+k++Lvfy+g+ap+g+ktdWvmheyrl Bradi4g07527.1.p 107 AVSvpaakgAAVVVGMKRSLVFYRGKAPSGKKTDWVMHEYRL 148 *998887665666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-50 | 12 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.898 | 16 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-26 | 17 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
METKESTVAA DASRRLPPGF RFRPTDEELV VHYLRRRALS SPLPAAVDIP DVRLLAHDPS 60 DLLPPGWSEE ERYFFTCKES KYVKGCRANR ATGAGYWKAT GKEKPVAVSV PAAKGAAVVV 120 GMKRSLVFYR GKAPSGKKTD WVMHEYRLAG AGLAPCRLAQ AAANANPEEG WVLCRVFRKK 180 KGAAAAADTG DIQDPAPEDD GGGAQSGVRF IDFFARAESR RRRAASPVSS SCVTDASAEH 240 CREQQETTSR GC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-40 | 10 | 181 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g07527.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093916 | 1e-157 | FP093916.1 Phyllostachys edulis cDNA clone: bphyem121f24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575526.1 | 0.0 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 2e-53 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | I1IIG7 | 0.0 | I1IIG7_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G07527.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-50 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g07527.1.p |
Entrez Gene | 100836791 |
Publications ? help Back to Top | |||
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