PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g06290.1.p | ||||||||
Common Name | BRADI_4g06290, LOC100843085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 618aa MW: 65666.9 Da PI: 6.2917 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 222 | 243 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg Bradi4g06290.1.p 222 PCPEFKKGAGCRRGDMCEYAHG 243 8******88************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 6.53E-10 | 26 | 136 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.9E-6 | 51 | 124 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.2E-11 | 52 | 141 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.063 | 56 | 127 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.97E-5 | 58 | 132 | No hit | No description |
PROSITE profile | PS50088 | 10.179 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.8E-4 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 220 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 222 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.925 | 253 | 277 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 87 | 253 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MGEASEYEGV DVAAVSSRLL ELAADDDAEA LGCLLAVHPC LADEPAPWYS SARGAEPMTP 60 LMVAAAYGSV ACLDALLSPP HLADPNRASA SSLSTPLHLA AAGGAPSAPT AVSRLLASGA 120 DPTLLDHLHR RPSDLVALPP NSLPLKNHLL SLLGARKEWP PDPSLPDIKN GAYASDDFRM 180 YSFKVRACSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFKKGA GCRRGDMCEY 240 AHGVFESWLH PAQYRTRLCK DGVGCARRVC FFAHTPEELR PLYVSTGSAV PSPRGAMEMA 300 AMGMGLSSPG SSFTPPMSPS GGGSGMSWPQ PNLPALCLPG SAGNLHLSRL RTSLSARAMA 360 VDELLAAVDY DNHVGSPASV RSARGKALVP SNLDDLFSAE MAASHSPRYA DQGGAAHSPT 420 HRSALLNQFQ QQQSLLSPRA MATPEPVSPM SSRLLAALAQ REKMQQQTLR SMSSRDLGSN 480 ASVLVGSPVV SSSWSKWGLP SGAPDWGADN DELGRLKRSS SFDLRSGANT DEPDLSWVNT 540 LVKETTPEKS LIHGTMGTES IGILGRSANH REGIDGEDIA ILGRSANRRE GIDGEEDAAT 600 GVIGGWLEQL QLDEMVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g06290.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310956.1 | 0.0 | zinc finger CCCH domain-containing protein 67 | ||||
Swissprot | Q2QPW2 | 0.0 | C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | I1II16 | 0.0 | I1II16_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G06290.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 | Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-127 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g06290.1.p |
Entrez Gene | 100843085 |