PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g03620.1.p | ||||||||
Common Name | BRADI_4g03620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 577aa MW: 63138.5 Da PI: 6.9414 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.5 | 1.2e-10 | 279 | 408 | 10 | 127 |
NAM 10 tdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknr..atksgyWk.. 84 td el+ ++L + +e+ + + +++ ++d+ +P++Lp ++ +++ F+++ + ++g+rk+ t +gyW Bradi4g03620.1.p 279 TDVELLLKHLDPACERLPrkyisQPRRRAVVNADLPVKNPQELPGvdrgegrigIHYLTDNLKLCFAQNTQLLENGQRKKFtlETPDGYWTlr 371 899**********9999977765444458999************546676655422225556689999999999999999844588****944 PP NAM 85 .atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + g+ +++ + vg kkt+ f +++g+kt+W+m+ y+ Bradi4g03620.1.p 372 dSAGERNDIWC----IVGFKKTFEFR---TKSGTKTKWIMNVYS 408 45566666666....9*********6...89999******9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.403 | 270 | 428 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.07E-11 | 279 | 428 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-5 | 279 | 408 | IPR003441 | NAC domain |
PROSITE profile | PS50808 | 10.773 | 504 | 561 | IPR003656 | Zinc finger, BED-type |
SMART | SM00614 | 7.3E-12 | 504 | 559 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 7.97E-7 | 507 | 558 | No hit | No description |
Pfam | PF02892 | 5.3E-8 | 507 | 552 | IPR003656 | Zinc finger, BED-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MSSQIPILIP ARKCASHPPP KSHLCSPLLP LPGRISPHQG AMGQEGSFEV GDKVFSRSIL 60 WIGVGYFDDF ASTPLDWGFP IDPLSHHPSP PPPPSPSHHM NIDLPQSSVA AEFQPPPADG 120 DLVSTPSDAG FPIDQLWSSP PLPSYQMNVD PPKSPVAVEL QPPPGGDLVP TPVRHVPPPS 180 PSRHMNIDLP QSSLAELSSD AGFPIDQLSS PPPLPSYHMN IDLPRSSLAA ELQPPSSGDS 240 VSSTVRPVPP PLPGQTDRPR SAIEEELQAW RLPDLPDVTD VELLLKHLDP ACERLPRKYI 300 SQPRRRAVVN ADLPVKNPQE LPGVDRGEGR IGIHYLTDNL KLCFAQNTQL LENGQRKKFT 360 LETPDGYWTL RDSAGERNDI WCIVGFKKTF EFRTKSGTKT KWIMNVYSRV NGSYFVEDDL 420 ALCHVFEQDS PGYDPRPKCP TFHEGRCDGL SKVTVHHYQD QRSCPRFIPF TPNPGFLVGD 480 PDPDTSTQRG VPPTADHAES KKRKVGSDVW EYFTKIFARD IKGNVLTFAV CNHCSKVLTG 540 GSSGGTTHLK NHTCACKLKP VLAGRNQKAS VSVSSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g03620.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578557.1 | 0.0 | uncharacterized protein LOC100842183 isoform X1 | ||||
TrEMBL | A0A0Q3HDB1 | 0.0 | A0A0Q3HDB1_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G03620.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18590 | 8 | 9 | Representative plant | OGRP17864 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 7e-09 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g03620.1.p |