PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g03000.5.p
Common NameBRADI_4g03000, LOC100842086
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 612aa    MW: 69650.3 Da    PI: 6.1534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g03000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-14521311398
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +  +++p+kf+e+++g+ +e   ++le ++g+ ++v     k  +++ l++GW +F++  +Lkeg ++vF+++++s f  +v +f+
  Bradi4g03000.5.p  52 HEKMIIPRKFVENFKGQIAE--VIKLEAPDGNIYNVHT--IKDLNKIHLGSGWASFANLYELKEGYMLVFRYIRDSHF--KVLIFD 131
                       4569*******999888555..8***************..89999999**************************9999..888775 PP
2B350.15e-162082831394
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       ++ +++p kf++++ g    s  +++e ++g+++++++  +k  +++vl++GW  F++ ++Lke D++vF+++g+s f+   
  Bradi4g03000.5.p 208 RQEMSIPEKFVNNFRGH--ISEVIKVEAPDGNVYSIQV--TKDLDKIVLGSGWAAFADTHELKEHDVLVFRYIGDSHFK--T 283
                       4569*******888655..5678***************..**********************************99994..3 PP
3B3391.5e-12413496993
                       HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +l++  lv+ k +a +h   + ++  +tl + +s+++W+  +++  ++ +   ++ ++GW eFv++ +L+egD+++F+ ++++++  v
  Bradi4g03000.5.p 413 TSLSE-SLVICKAYAVKHLPHEDQP--ITLCHpQSSKTWDASFRVIIYGTSilpCITSTGWLEFVQDSKLQEGDICIFEISKSDGR--V 496
                       44444.5***********5444455..777774777****999887777776788899*********************7764444..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.0E-1936135IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1737131IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8740133IPR003340B3 DNA binding domain
CDDcd100172.81E-1741131No hitNo description
SMARTSM010191.5E-643133IPR003340B3 DNA binding domain
PfamPF023622.9E-1252131IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-20192291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-19193291IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.575196289IPR003340B3 DNA binding domain
CDDcd100172.08E-17197286No hitNo description
SMARTSM010191.4E-6199289IPR003340B3 DNA binding domain
PfamPF023628.5E-14208283IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-15401499IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-14401493IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.068404504IPR003340B3 DNA binding domain
CDDcd100173.71E-12404502No hitNo description
SMARTSM010194.2E-4406504IPR003340B3 DNA binding domain
PfamPF023624.4E-10414499IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MAGQDHEQDD RSGHNISSRS CQRCEHCYAH YYWCHLDDTR KYFFECMVGD FHEKMIIPRK  60
FVENFKGQIA EVIKLEAPDG NIYNVHTIKD LNKIHLGSGW ASFANLYELK EGYMLVFRYI  120
RDSHFKVLIF DYGSCCEKEV FHVVMNRGGP DAQEGTHLDQ SPPRRSQDGG PSNGESHRRC  180
EWCDAHYYWH HLDDRQKHFF RFMVGNFRQE MSIPEKFVNN FRGHISEVIK VEAPDGNVYS  240
IQVTKDLDKI VLGSGWAAFA DTHELKEHDV LVFRYIGDSH FKTIIFEPNG CEKELFHVVM  300
NRACNVGETG IFCDQPVPKE ARCRYGGSHD NDNRKSKKKT PLHLPSPRSA EGVASSEDIQ  360
DTMNSCGLQE TAEPLYVLAK ECNLTTEQKA EVGALVKKNR PGVPFYITAL NKTSLSESLV  420
ICKAYAVKHL PHEDQPITLC HPQSSKTWDA SFRVIIYGTS ILPCITSTGW LEFVQDSKLQ  480
EGDICIFEIS KSDGRVIMVI HSLEGGYHPP SKEPESQNNC EHLVKGEATD QDEESDDEHA  540
EPDCYYSRFA NYLTAEEQEE IFGLASIQLG NPVYVTVLCK SHVRGSNNML VIHNQFAAKH  600
LAERSHDILL L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g03000.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758592.10.0B3 domain-containing protein Os12g0591400 isoform X2
TrEMBLA0A0Q3EI820.0A0A0Q3EI82_BRADI; Uncharacterized protein
STRINGBRADI4G03000.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-21B3 family protein