PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g03000.3.p
Common NameBRADI_4g03000, LOC100842086
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 647aa    MW: 73726.2 Da    PI: 6.2401
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g03000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-13911661798
                       E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++p+kf+e+++g+ +e   ++le ++g+ ++v     k  +++ l++GW +F++  +Lkeg ++vF+++++s f  +v +f+
  Bradi4g03000.3.p  91 IIPRKFVENFKGQIAE--VIKLEAPDGNIYNVHT--IKDLNKIHLGSGWASFANLYELKEGYMLVFRYIRDSHF--KVLIFD 166
                       79*****999888555..8***************..89999999**************************9999..888775 PP
2B3505.5e-162433181394
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       ++ +++p kf++++ g    s  +++e ++g+++++++  +k  +++vl++GW  F++ ++Lke D++vF+++g+s f+   
  Bradi4g03000.3.p 243 RQEMSIPEKFVNNFRGH--ISEVIKVEAPDGNVYSIQV--TKDLDKIVLGSGWAAFADTHELKEHDVLVFRYIGDSHFK--T 318
                       4569*******888655..5678***************..**********************************99994..3 PP
3B338.91.6e-12448531993
                       HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +l++  lv+ k +a +h   + ++  +tl + +s+++W+  +++  ++ +   ++ ++GW eFv++ +L+egD+++F+ ++++++  v
  Bradi4g03000.3.p 448 TSLSE-SLVICKAYAVKHLPHEDQP--ITLCHpQSSKTWDASFRVIIYGTSilpCITSTGWLEFVQDSKLQEGDICIFEISKSDGR--V 531
                       44444.5***********5444455..777774777****999887777776788899*********************7764444..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.6E-482168IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-1788170IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-1590166IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.23691168IPR003340B3 DNA binding domain
PfamPF023624.1E-1191166IPR003340B3 DNA binding domain
CDDcd100174.06E-1591166No hitNo description
SuperFamilySSF1019362.75E-20227326IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-19228326IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.575231324IPR003340B3 DNA binding domain
CDDcd100173.63E-17232321No hitNo description
SMARTSM010191.4E-6234324IPR003340B3 DNA binding domain
PfamPF023629.2E-14243318IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-15436534IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-14436528IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.068439539IPR003340B3 DNA binding domain
CDDcd100175.53E-12439537No hitNo description
SMARTSM010194.2E-4441539IPR003340B3 DNA binding domain
PfamPF023624.7E-10449534IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAGQDHEQDD RSGHNISSRS CQRCEHCYAH YYWCHLDDTR KYFFECMVGD FHEKMVSPGE  60
HTLSLKWNAI LPRIINVFSL LFFYCILFLQ IIPRKFVENF KGQIAEVIKL EAPDGNIYNV  120
HTIKDLNKIH LGSGWASFAN LYELKEGYML VFRYIRDSHF KVLIFDYGSC CEKEVFHVVM  180
NRGGPDAQEG THLDQSPPRR SQDGGPSNGE SHRRCEWCDA HYYWHHLDDR QKHFFRFMVG  240
NFRQEMSIPE KFVNNFRGHI SEVIKVEAPD GNVYSIQVTK DLDKIVLGSG WAAFADTHEL  300
KEHDVLVFRY IGDSHFKTII FEPNGCEKEL FHVVMNRACN VGETGIFCDQ PVPKEARCRY  360
GGSHDNDNRK SKKKTPLHLP SPRSAEGVAS SEDIQDTMNS CGLQETAEPL YVLAKECNLT  420
TEQKAEVGAL VKKNRPGVPF YITALNKTSL SESLVICKAY AVKHLPHEDQ PITLCHPQSS  480
KTWDASFRVI IYGTSILPCI TSTGWLEFVQ DSKLQEGDIC IFEISKSDGR VIMVIHSLEG  540
GYHPPSKEPE SQNNCEHLVK GEATDQDEES DDEHAEPDCY YSRFANYLTA EEQEEIFGLA  600
SIQLGNPVYV TVLCKSHVRG SNNMLVIHNQ FAAKHLAERS HDILLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g03000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758591.10.0B3 domain-containing protein LOC_Os12g40080 isoform X1
TrEMBLA0A0Q3IIL80.0A0A0Q3IIL8_BRADI; Uncharacterized protein
STRINGBRADI4G03000.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-21B3 family protein