PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02991.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 382aa    MW: 43707.9 Da    PI: 6.3679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02991.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.5e-1631122199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       ffk +     ++++ +++p k a+++  +++  e+    l+ +sg++W v +  +k  ++ +++ GW++F+ka++L+e+D v+F+++g+s+f 
  Bradi4g02991.1.p  31 FFKLM--TGDFEQH-ISIPEKVASKFirQMQIVEG--FDLKAPSGETWHVGV--TKVANELFFRLGWRDFAKAHELQENDLVLFTFTGNSSF- 115
                       56655..4455555.9*******999884444455..8899***********..**********************************9999. PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                         v +f++
  Bradi4g02991.1.p 116 -EVLIFDA 122
                       .8888886 PP
2B348.41.7e-15265349186
                       EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f +vl +s+v  + + l++p +fa++h +   +s ++ l    +  +W v++ y+++s+r +  + W +Fv++n+L egD++vF+l++
  Bradi4g02991.1.p 265 FMTVLQTSNVQGKhKFLIIPIEFAADHLQR--KSHDVLLIRpGREDKWYVRH-YQGSSSRGFKCQPWAKFVRDNRLHEGDVCVFELIK 349
                       66777777776552778**********544..4446666663677*******.777777744555********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-1924125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.15528123IPR003340B3 DNA binding domain
CDDcd100177.46E-1630121No hitNo description
Gene3DG3DSA:2.40.330.101.8E-1930125IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-1331122IPR003340B3 DNA binding domain
SMARTSM010198.6E-1131123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-18258351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-19259351IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-14263349No hitNo description
PfamPF023621.0E-13265349IPR003340B3 DNA binding domain
SMARTSM010192.7E-6265356IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026266368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDEEGKGRCE RCKEWQEHFY WEHMDVSKMR FFKLMTGDFE QHISIPEKVA SKFIRQMQIV  60
EGFDLKAPSG ETWHVGVTKV ANELFFRLGW RDFAKAHELQ ENDLVLFTFT GNSSFEVLIF  120
DASGCEKLSS LFSGKMREHF DDLGGQHVEQ HSLIDDCDDN DDNDSDDNDD NDSGEDDSES  180
LPSLSVESSH KKSSTSKKFS AKTKPRKEPS QSPTSSSCDD VKHETSDGDE SDHEPYYSRS  240
AKRLLDTEKR EIIGLALIQP DNPAFMTVLQ TSNVQGKHKF LIIPIEFAAD HLQRKSHDVL  300
LIRPGREDKW YVRHYQGSSS RGFKCQPWAK FVRDNRLHEG DVCVFELIKC ARRKTKKAAM  360
AMMVVHVARR RKADSRFVAV G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351371RRKTKKAAMAMMVVHVARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02991.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318846.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT21e-114Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0Q3EEB90.0A0A0Q3EEB9_BRADI; Uncharacterized protein
STRINGBRADI4G02990.11e-159(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-23B3 family protein