PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g02673.1.p | ||||||||
Common Name | BRADI_4g02673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 23234.5 Da PI: 7.0716 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.1e-11 | 100 | 140 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR +iN+++ +L++++P + +s a++L ++++Y++sLq Bradi4g02673.1.p 100 ARRRRCKINEKLKTLQQMVPGC------EPSQASTLDQTIHYVRSLQ 140 69*******************9......79****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.90E-13 | 87 | 144 | No hit | No description |
PROSITE profile | PS50888 | 10.925 | 91 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-13 | 97 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 97 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-13 | 97 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-9 | 100 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MTSCSGEEPA GELATNFLEL LGDQDDYRYP THGMLATPPS DDEMAAWLYP IISHGDQKPA 60 VGDDDVVKQN DRPVVSSVKA TMNKQLKEKR LSTTPKKNLA RRRRCKINEK LKTLQQMVPG 120 CEPSQASTLD QTIHYVRSLQ NQVQAMSVVG CSLRPPVPAS IGPPPPPMMV PFVPILPCPA 180 HHPAAIHDAA TGAVDLPASS SCTGCWWPSS SSGLQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g02673.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020398223.1 | 3e-26 | transcription factor PIF1 | ||||
TrEMBL | A0A0Q3EI22 | 1e-158 | A0A0Q3EI22_BRADI; Uncharacterized protein | ||||
STRING | Sb08g020300.1 | 4e-23 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 | Representative plant | OGRP10440 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 6e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g02673.1.p |