PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g01300.2.p | ||||||||
Common Name | BRADI_4g01300, LOC100826382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20342 Da PI: 8.8562 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 227.6 | 3.1e-70 | 8 | 172 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl.deslkeelleelkveeenlksnvekeesastsv 96 +eqvCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+ ++ a++ d++l+ + ++ +++ ++ s ++++s++ Bradi4g01300.2.p 8 APAEQVCYVHCNFCNTVLAVSVPGNSMLSIVTVRCGHCTNLLSVNLRGLMHSSAVVPAAqDHHLQVHGVDGFRDHP-EFGSSSSSSSSSKFRL 99 5789*******************************************99988887765414555556666666665.5666667777777777 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++s ++d ++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ih gl Bradi4g01300.2.p 100 PMVMFSPQNDLLQEHTL-HSRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHCGL 172 77777665555555444.59***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.5E-72 | 9 | 172 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.49E-8 | 117 | 166 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.7E-5 | 119 | 166 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSSAAQIAPA EQVCYVHCNF CNTVLAVSVP GNSMLSIVTV RCGHCTNLLS VNLRGLMHSS 60 AVVPAAQDHH LQVHGVDGFR DHPEFGSSSS SSSSSKFRLP MVMFSPQNDL LQEHTLHSRP 120 PEKRQRVPSA YNRFIKEEIR RIKANNPDIS HREAFSTAAK NWAHYPNIHC GLSSGRDGGK 180 KLAVE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g01300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577247.1 | 1e-137 | protein YABBY 6 isoform X2 | ||||
Swissprot | Q2QM17 | 7e-90 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | I1IGA4 | 1e-135 | I1IGA4_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G01300.1 | 1e-128 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-56 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g01300.2.p |
Entrez Gene | 100826382 |