PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g59410.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Nin-like | ||||||||
Protein Properties | Length: 215aa MW: 24719.5 Da PI: 6.9053 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 77.4 | 1.7e-24 | 97 | 144 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s++F pik+AA eL+v+lT LKr+CR++GI+RWPhRk++sl Bradi3g59410.4.p 97 LTFELVSQHFCVPIKQAAAELKVGLTQLKRRCRELGIPRWPHRKMRSL 144 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.086 | 78 | 165 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.5E-22 | 97 | 144 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MYPLPQWSIE YLQEESPFFS TQHRLCTSTA TATQSYFCQD ELYALFQGDI LSLWAALEEE 60 APCKSEKELE LEQKLGPDAV EKTRMSNGPP EQEKPLLTFE LVSQHFCVPI KQAAAELKVG 120 LTQLKRRCRE LGIPRWPHRK MRSLQTLIDN VQELGRGTGE DGGMTKIVVE MLQQTKKLME 180 ERPGDVELDH TTKMLRQKCF KENYKRKRLM ALQG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g59410.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756209.2 | 1e-151 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 7e-30 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2K2D5V1 | 1e-157 | A0A2K2D5V1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G59410.1 | 1e-157 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-32 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g59410.4.p |