PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g57800.1.p
Common NameBRADI_3g57800, LOC100827898
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 326aa    MW: 34983.8 Da    PI: 10.5567
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g57800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.41.3e-15130199371
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk 71 
                       +qrlws+ De++lL+G   f+a+tg  p   d+  +++ +++s+s +  +  +  K++rLK Kf +    
  Bradi3g57800.1.p 130 VQRLWSDADEVALLKGAAAFRARTGRVPRLpDMGPLFDSIRGSLSPHLDQAKVYYKLKRLKSKFLHAAPA 199
                       79************************77766*********************************988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.5E-15131218IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPSKRPSPSA MDAMDAAAAS SPPSSPGSQK RPSRPKLRLD QGRPEPNPRS RGSHSGSNPS  60
RKSGRKRNRR PRALPEPDAV TALPAERRPR ALPEPGAGTP SAERRSRPLP EAAALTVLAA  120
ATGAGYRGAV QRLWSDADEV ALLKGAAAFR ARTGRVPRLP DMGPLFDSIR GSLSPHLDQA  180
KVYYKLKRLK SKFLHAAPAA AAGPHDLLVR DLCYDVWGAH LGLSAEDDAV EAEEEASERR  240
TVPDAAAMLP VVTEVLDAYW KTSGPALSGV SLEKGLSLLG TEAARSIEAK WRKQLDEEVH  300
SQMRRHDLAK EVYGLLLDAI KRLGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g57800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892341e-94AK289234.1 Oryza sativa Japonica Group cDNA, clone: J100073J19, full insert sequence.
GenBankAP0040801e-94AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBankAP0041251e-94AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02.
GenBankAP0149581e-94AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236068.10.0STOREKEEPER protein
TrEMBLA0A0Q3INF30.0A0A0Q3INF3_BRADI; Uncharacterized protein
STRINGBRADI3G57800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Representative plantOGRP1306744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.12e-10DNA-binding storekeeper protein-related transcriptional regulator