PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g56180.2.p | ||||||||
Common Name | BRADI_3g56180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 292aa MW: 32304.3 Da PI: 4.2492 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 8e-21 | 31 | 84 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k Bradi3g56180.2.p 31 KKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 84 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 3.9e-42 | 30 | 121 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktk lE+d+++Lk+++dal++++++L +++++Lr+++ Bradi3g56180.2.p 30 EKKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKTLERDFDRLKASFDALRADHDALLQDNHRLRSQVV 121 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.8E-20 | 23 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.285 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-20 | 29 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-20 | 31 | 86 | No hit | No description |
Pfam | PF00046 | 4.4E-18 | 31 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-22 | 32 | 92 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.7E-6 | 57 | 66 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.7E-6 | 66 | 82 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-16 | 86 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MEEGRGVKRP FFTSPDDLLE EEYYDEQLPE KKRRLTPEQV HLLEKSFEEE NKLEPERKTE 60 LARKLGLQPR QVAVWFQNRR ARWKTKTLER DFDRLKASFD ALRADHDALL QDNHRLRSQV 120 VTLTEKMQEK EAPGPAGGAA MDASEQLQPP EDQAKASVDA EEQMAAAEAF DEALLLQQVK 180 AEDRLSTGSG AGSAVLDADA LLAVVDSSVE SYSYFPPGGA ADEYHHDCVM GGAGGIQSEE 240 DDGAGSDEGC SYLPDDDAGV LFGAGHGHHH AEDEEEDGGQ ISWWMWNWST S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g56180.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364006 | 1e-174 | AK364006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020M04. | |||
GenBank | AK364258 | 1e-174 | AK364258.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023C19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572981.1 | 0.0 | homeobox-leucine zipper protein HOX16 | ||||
Swissprot | A2X980 | 1e-107 | HOX16_ORYSI; Homeobox-leucine zipper protein HOX16 | ||||
Swissprot | Q6YWR4 | 1e-107 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A0Q3IMM6 | 0.0 | A0A0Q3IMM6_BRADI; Uncharacterized protein | ||||
TrEMBL | I1IE89 | 0.0 | I1IE89_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G56180.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-51 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g56180.2.p |
Publications ? help Back to Top | |||
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