PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g55978.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 624aa    MW: 73044.7 Da    PI: 7.9563
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g55978.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.66.4e-1144136190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fYn ++ e GF ++  ks+ +   g+  ++++ C  + ++ +e+       + +++++++ r++C+a +++  +++g w+v+k +  H+H+l
  Bradi3g55978.1.p  44 DFYNIHSWESGFGIQHGKSRVN-ARGRRSMQELLCVSNQYQYSENVMfllqGKPTKENSSSARCKCTALIRLLGTESGGWYVSKHRAGHTHTL 135
                       6*****************9999.555588999999999888888777899888899999********************************99 PP

              FAR1  90 a 90 
                       +
  Bradi3g55978.1.p 136 T 136
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-844136IPR004330FAR1 DNA binding domain
PfamPF105512.1E-20248337IPR018289MULE transposase domain
PROSITE profilePS509669.062495531IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-4506533IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
VQLGYPPDAS ALEKAMMGFA ERKTEVVVNP TVGTCFDSLH EAYDFYNIHS WESGFGIQHG  60
KSRVNARGRR SMQELLCVSN QYQYSENVMF LLQGKPTKEN SSSARCKCTA LIRLLGTESG  120
GWYVSKHRAG HTHTLTQTCQ ENSAWSSHRH INEDTKNSIR QLREKENNVD LGEMYKIIGS  180
LFGRTENAVP CTDHIADIRK TMDAFHEIKA EDPGFVYTVQ IDDELRVKTL LWTNNSCRLQ  240
YEWFGDAITF DTTYRPSLYG KTFGIFFCVN NNFKTKVLAG VLMRDRKIES FKWVFSTFVE  300
LMGGKHPQTI LTDQCQAMED AILEVLPSTT HRWCNFQTEF HRILDDMLTA NEFERAWEML  360
LDKYGLENHP FLTQIYEVRH KWAKPYFRDI FCAKQTSTQK SETVERLLAK YVPPDRSMDL  420
FVKQYEELHD EIVLRTNLPI EKHASEVYTR TMYEMFRKTL CESEFYEVEV LIPNLRYIAR  480
RHKTETRDKW SMVQHEVNVR EDGGAFICVC KRFEHTGMLC CHAVKVMIHL GVLEIPSFHI  540
MPRWTPKLCW KHRGHPETKT CSSCRQYVVY DRMLNMIRLC YGEPELEELA IRRFDELKQT  600
LSTMEVPVVK QRRGKLKRRF RDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610617QRRGKLKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g55978.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316211.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X2
TrEMBLA0A2K2D5A50.0A0A2K2D5A5_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-56FAR1-related sequence 7