PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g52500.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 224aa MW: 24798.9 Da PI: 7.2722 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 29.6 | 1.5e-09 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m++kgLtl+h+kSHLQkYR+ Bradi3g52500.4.p 1 MGMKGLTLYHLKSHLQKYRM 20 899****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 6.2E-25 | 65 | 109 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGMKGLTLYH LKSHLQKYRM GKQSKKDTGF ETSRAAFATH GISFSSATPP VVPSAGNNNM 60 GETPLADALR YQIEVQRKLH EQLEVQKKLQ MRIEAQGKYL QTILEKAQKN LTYDSSAATN 120 LEATRSQLTD FNLALSGFMD DATQVCEQNN GELAKVISED NLRAGNLGFQ LYHGVQDAED 180 VKCTADEDLL LLDLNIKGGY DHRLSSHGMR RGDADLTVGQ HRR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g52500.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570169.2 | 1e-165 | myb family transcription factor PHL11 | ||||
TrEMBL | I1ICX0 | 1e-165 | I1ICX0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G52500.1 | 1e-166 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g52500.4.p |