PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51960.1.p
Common NameBRADI_3g51960, LOC100829508
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 477aa    MW: 50888.9 Da    PI: 7.6791
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-1761105147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r +WT+eE++++++a +++G   W++I +++g ++t+ q++s+ qk+
  Bradi3g51960.1.p  61 REKWTEEEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 105
                       789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1655111IPR009057Homeodomain-like
PROSITE profilePS5129420.2556110IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1559108IPR006447Myb domain, plants
SMARTSM007174.3E-1360108IPR001005SANT/Myb domain
PfamPF002491.0E-1461104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-961101IPR009057Homeodomain-like
CDDcd001672.83E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MASLQENAMA TDENAVAHRA AGGENTVDHH RKNHLNSDDM DLSGEDHVPK ARKPYTITKQ  60
REKWTEEEHK RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVT KESSGSSGGG  120
SGSVAAAAIQ IPPPRPKRKP AHPYPRKADE GAPAASKHGV TGLTQLERPP PVRMQSMCEQ  180
EDGSPTSVLG GGFSNNSNGS RSPLPSAAGS DEHGNNNVYG SSVDGCFSSS IATDELGLQV  240
PKTKASERIS NGDVKEASYT GSETSVLKLF GKSVVLKDSC QKPNTSTGTL HNGGDLGTEA  300
SAETATQRSR SVPSVGATEG GSWNPWPSSM QQFVYFVPQP SDGFTTQSAM PWFSYNGALP  360
GALFYQQAMA PNQQLRHHST AADNKVTQRE GSWTGSNTAP GSAAAQNSEA ADSRGRGNSS  420
ESDTTPLPRL TKCESSVSVS LQRGFVPYKR CAAESESPRS EAPREEADGE LTRLCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51960.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572833.20.0myb-like protein H
TrEMBLI1ICP90.0I1ICP9_BRADI; Uncharacterized protein
STRINGBRADI3G51960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-35MYB_related family protein