PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g51757.8.p | ||||||||
Common Name | BRADI_3g51757 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 265aa MW: 29338.2 Da PI: 9.0682 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 32 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Bradi3g51757.8.p 32 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 76 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-17 | 26 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 27 | 81 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.0E-18 | 30 | 79 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.9E-7 | 30 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-11 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-8 | 34 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MVSANAPPPQ LAEAGDDASK KVRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF 60 VGSKTVIQIR SHAQKYFLKV QKNGTSEHVP PPRPKRKAAH PYPQKASKNE PGYTLKTDAS 120 SMLRNSGMNV AVSSWTHNSI PPVVASSLVK DLGAGSMGPN IFCSSSSEGP PRAWQPGETN 180 DQINQVPSLH TKPDFAQVYS FLGSVFDPST NGHLQKLKEM NPIDFETALL LMRNLSINLT 240 SPDFEDQVSS YLKCLQNLDH TCTK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g51757.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354834 | 0.0 | AK354834.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011N06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235824.1 | 0.0 | protein REVEILLE 6 isoform X2 | ||||
Swissprot | Q8H0W3 | 2e-94 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0Q3QGB1 | 0.0 | A0A0Q3QGB1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G51757.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 8e-83 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g51757.8.p |
Publications ? help Back to Top | |||
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