PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51650.1.p
Common NameBRADI_3g51650, LOC100845392
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 433aa    MW: 46428.7 Da    PI: 7.7665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07110130425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C++f++ G C yG++C+F H
  Bradi3g51650.1.p 110 RPCKYFLA-GDCTYGEKCRFPH 130
                       79******.***********66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.9582854IPR000571Zinc finger, CCCH-type
SMARTSM003560.112953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6107131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4110130IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4110130IPR000571Zinc finger, CCCH-type
SuperFamilySSF509784.3E-46137425IPR017986WD40-repeat-containing domain
SMARTSM003209.5E-7137176IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.6E-46139424IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004005.5E-6141176IPR001680WD40 repeat
PROSITE profilePS5029421.858144393IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.652144185IPR001680WD40 repeat
PRINTSPR003208.8E-8163177IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
SMARTSM00320410179214IPR001680WD40 repeat
SMARTSM003204.9216253IPR001680WD40 repeat
SMARTSM003200.0061260297IPR001680WD40 repeat
PfamPF004000.015265297IPR001680WD40 repeat
PROSITE profilePS5008211.645267306IPR001680WD40 repeat
PROSITE patternPS006780284298IPR019775WD40 repeat, conserved site
PRINTSPR003208.8E-8284298IPR020472G-protein beta WD-40 repeat
SMARTSM003202.9E-4300337IPR001680WD40 repeat
PfamPF004000.0095302336IPR001680WD40 repeat
PRINTSPR003208.8E-8324338IPR020472G-protein beta WD-40 repeat
SMARTSM0032015341384IPR001680WD40 repeat
SMARTSM0032071388424IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDLEADGRFG NKRVHNRLGP APGAASSSSS GKVCVHWRAG RCNRFPCPFL HSELPEATSK  60
RPSQRDGPGG HVWRNPNSGG GGGRGGGGFN KWGRGPGGAD GGVRHKVPDR PCKYFLAGDC  120
TYGEKCRFPH TYCMSNSITL LTPLQGHEKV VTGIALPTGS DKLYSGSKDG TVRLWDCQTG  180
QCASVINIGA EIGCMIIEGP WLFVGLPDAV KVWNMQTQAE MNLTGPTGQV YALAVGNELL  240
FAATQDGRIL AWRFSAATNC FEPAASLVGH QLAVVSLVVG AMRLYSGSMD KTIRVWDLAT  300
LQCIQTLSDH TSVVMSVLCW DQFLLSCSLD QTIKVWAATE SGNLEVTYTH KEENGALALT  360
GMPDAQSKPV LVCSLNDNTV RLYDLPSFGD RGRIFSKQEI RAIQTGPGGL FFTGDGAGEL  420
KVWQWVIDAS QT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-231414236323Tako8
6g6n_A1e-231414236323Tako8
6g6n_B1e-231414236323Tako8
6g6n_C1e-231414236323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594520.0AK359452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1097E17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570098.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLI1ICL00.0I1ICL0_BRADI; Uncharacterized protein
STRINGBRADI3G51650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]