PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51409.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 301aa    MW: 33176.3 Da    PI: 8.1656
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51409.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.6e-282075255
           G2-like  2 prlrWtpeLHerFveaveqLGGse..kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      pr++Wt eLH++Fv+av+ LGG++  ++tPk+il+lm+v gLt++hvkSHLQ+YR 
  Bradi3g51409.1.p 20 PRMKWTDELHSSFVRAVDFLGGQDstRTTPKRILQLMDVRGLTISHVKSHLQMYRC 75
                      8*********************974479***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-261675IPR009057Homeodomain-like
SuperFamilySSF466899.85E-152076IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-212075IPR006447Myb domain, plants
PfamPF002492.1E-72174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGKRRRNDGL VRQYTRSEVP RMKWTDELHS SFVRAVDFLG GQDSTRTTPK RILQLMDVRG  60
LTISHVKSHL QMYRCTPRGI GEKETQLQLH PKNHSFAVDE RGSKGFIFPP IKRAKVGTEI  120
AAARNMQGSS DMRRRIPGNQ CCIDDYVQLQ AMSMDRRNVN GGLEWQSAAT AASVVNLQHL  180
GSWVQEPEPS KVSIPEPRDH LNHTARRISS TESYESWCLL FSGATTGEDE PDDSAANKCS  240
PRLSLAVEQK AEDVVSSWPS ESSCVLSPSS RSFSDCSGPP GCGFAGQHVN LDLSLSICGS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51409.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756067.10.0myb-related protein 2
TrEMBLA0A2K2D4K70.0A0A2K2D4K7_BRADI; Uncharacterized protein
STRINGBRADI3G51410.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-25G2-like family protein