PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g48330.2.p
Common NameBRADI_3g48330, LOC100843796
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 812aa    MW: 91927.1 Da    PI: 8.4438
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g48330.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.8e-1753136190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  Bradi3g48330.2.p  53 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVEFAILDHNHPVS 136
                       5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1553137IPR004330FAR1 DNA binding domain
PfamPF105511.5E-29257349IPR018289MULE transposase domain
PROSITE profilePS509669.248543579IPR007527Zinc finger, SWIM-type
PfamPF044348.4E-6549575IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-5554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MEAEEASPSR KNPRRPRRRD LNALDPNLVE SDGEDIGIPE VGMVFNNHIE VNRFYRRYAR  60
RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA KIRVKLWGDK  120
LLHVEFAILD HNHPVSPSMA RFLNTYKQLS GPAKRRLRMG GPGAMPVEEP SKMPFDKLDA  180
LEELLFGESK HNSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVIDM DDEGCVRNVF  240
WADARTRAMY EYYNDAITLD TSYVVSKYDM PLVTFLGVNH HGQSILLGCG LLSDETVETY  300
TWLFKVWVAC MSGNLPKAII TDQCRGIQSA ISEVIPGVRH RICLFQIMRK TSEILGGLSE  360
YRAISKTLQK AAYDSLTVDE FEGEWSTLVA YNGLQGHEWL SSLYECRFSW VPIFLKDTFW  420
AGMSGTQRNE TITPFFDGYV DSKTTLKQFL VKYEMILQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK VYTHNIFKKF QDEIEAIMYC HVSFVGIDGP ISTFNVKECI FLEDGKRTMS  540
KIFAVTYTTE EEDITCICGG FQFSGILCRH SLSVLKFQQV HEIPSQYVLD RWNKDFRQLH  600
VMGRPSSDVV PNNRADRYDY LSMRCLQLVD SAVLSDKYRL ALRLVREVEK FLLNSNTHDD  660
TQPRIKSRIP KVNKPNTVTG LNLVNVPTDN GNGGPNVPEA SVCAPQVLKG VTENGGPPTG  720
YIGVPANVQQ FMGNQAAIRP SIVYMVPSGV DPQAFGNGVL MPVMYQQMFQ IPQQPNGAVQ  780
ETANGKKKRP RVQKLTETSH QSNGTPGPAS G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318RRPRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g48330.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757560.0AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575325.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1IBF20.0I1IBF2_BRADI; Uncharacterized protein
STRINGBRADI3G48330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-135FAR1-related sequence 6