PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g48310.1.p
Common NameBRADI_3g48310, LOC100832350
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 856aa    MW: 97811.9 Da    PI: 6.8748
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g48310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.12.9e-1395177290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +Y++YA + GFs  + ks++  ++g + +  + Cs+ g+ + +         +r++ +++C a++ +k+++d   ++++ +l+HnH+l+
  Bradi3g48310.1.p  95 YYKQYAVDSGFSAIILKSSYL-KSGVCRRLVLGCSRAGRGRVNACY-----LSRETAKINCPARISLKLRQDRWLHIDDAKLDHNHPLN 177
                       9*************9999998.7888***************99998.....89999**************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-1194177IPR004330FAR1 DNA binding domain
PfamPF105513.5E-24281374IPR018289MULE transposase domain
PfamPF044341.2E-6568601IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.297568605IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-5580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MVEELPTEVP IEDVSASAAV KSSELSGNGA LPKNVEKSQE LGGNPVRELP LHEGKEVILL  60
DDNDSGEEDV GRAKVDANAP RFGLRFKTYD DALRYYKQYA VDSGFSAIIL KSSYLKSGVC  120
RRLVLGCSRA GRGRVNACYL SRETAKINCP ARISLKLRQD RWLHIDDAKL DHNHPLNQSS  180
DSLMNCYKKL TDAKNGETTS RLKGRRNVPI VDREQGNFTE IGRLKFGEGD DEYIQKFFGG  240
MQNKNPNFFY LVDLDKQGRL RNLFWSDARS QAAYEYFGQD VVYFDTSYLT QKFDLPLVFF  300
TGMNNHGQSV LFGTGLLSDL SADSYTWLFR AFLTCMKDSY PYTIITEHYN AILDAVREVF  360
SQVKHRLCLY RIMKDVAENL KAHAEFKTIK KSLKKVTYGS LKIPEFEADW KKIIEEHSLA  420
ENECLSSLFM HRQLWAPAYL KDKFWAGMSV SQRGESVTSY YDGFVYPKTS LKQFFSKYEM  480
ILENKYKKEL QADEESSHRT PLTVTKFYME EQLAKAYTIS MFRKFQDELK ATMYCDGMET  540
SVDGSFVTFN VKECSYMEDG KETESRTYEV LCWKEEELIV QCECGFFEFT GILCRHALSV  600
LKLQELFEIP QRYVLDRWKR DYKKLHALSH YPNEMLLGGA VERHDYMFTQ CRQLLNLGFI  660
SESRYLVALK LLREAEKALL EDDLSARERQ STLLSFEAEA PENGQGLFSP QFPEGVKNSQ  720
SINAKRRGRP AKKVAESNPD TVLRSNKEQD FLRSSFVTAE TSMIQGTPPA SHLESSHMGM  780
QGSIDLMDGI SPNLSFGAHF GMDVNHQHQV PSQARMLPNN FMQVQADPHG FGNQWVYNPT  840
LQDNPLLRTP TRRAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g48310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572701.20.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLI1IBE90.0I1IBE9_BRADI; Uncharacterized protein
STRINGBRADI3G48310.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1458844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-115FAR1-related sequence 6