PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g48180.1.p | ||||||||
Common Name | BRADI_3g48180, LOC100841059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | DBB | ||||||||
Protein Properties | Length: 259aa MW: 27902.3 Da PI: 4.7233 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.5 | 2e-06 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ ++ C ++ lC C +e H H++ p Bradi3g48180.1.p 4 QCDSCGVAAATVVCCADEAALCGRCDVEVHAAnrlaskHQRLP 46 7*****999*********************6577888898877 PP | |||||||
2 | zf-B_box | 27.1 | 8.6e-09 | 55 | 86 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek + +fC +++ l+C+dC + +H Bradi3g48180.1.p 55 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 86 689**************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.826 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.89E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.688 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-6 | 55 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.85E-7 | 56 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKIQCDSCGV AAATVVCCAD EAALCGRCDV EVHAANRLAS KHQRLPLDAL GAGKLPRCDV 60 CQEKAAFIFC VEDRALFCRD CDEPIHVPGT LSGNHQRYLA TGIRVGFGGP VSACADADHG 120 ASHDADHHAP PMAPAAERPP AQAQQVPSPP QFLPQGWAVD ELLQFSDYES SDKLHKESPL 180 GFKELEWFTA DMELFQDQTP KGGRTAIEVP EFLNSQAADD AAYYRPSRGA ATAVVRQSKK 240 ARIEIPDDED FFIVPDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g48180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009289 | 0.0 | BT009289.1 Triticum aestivum clone wlm0.pk0023.h3:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575316.1 | 0.0 | B-box zinc finger protein 25 | ||||
Swissprot | Q9SID1 | 8e-72 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | I1IBD6 | 0.0 | I1IBD6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G48180.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3202 | 33 | 68 | Representative plant | OGRP5397 | 10 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 8e-58 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g48180.1.p |
Entrez Gene | 100841059 |
Publications ? help Back to Top | |||
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