PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g43822.2.p | ||||||||
Common Name | BRADI_3g43822, LOC100846738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35602.4 Da PI: 9.8837 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34 | 7.3e-11 | 200 | 240 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt +eAa+++++a+ Bradi3g43822.2.p 200 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 240 8**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.966 | 174 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-4 | 198 | 255 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-7 | 200 | 243 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-5 | 200 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-6 | 205 | 244 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAIRHQSPSQ KTIKKERNPQ RLITGREEKE REIRVVAAAR GNRNKAKVVD VSHPLCIPRQ 60 LLLPTSFFLP SSLGPLSSSP SFGCFLLLPP PPPADDAGGS SSMVSLRRRR LLGLCSGKDS 120 VDLPKPVENE KHVEAAHSNV NPLSVHPLPL TEASDVLPES SNGSDSLKEE KNQYYPGKEI 180 KRRKRHRRKQ YVDQEPCIKR GVYFKNMKWQ AAIKVDKKQI HLGTVGTQDE AARLYDRAAF 240 MCGREPNFEL SEEEKSELEK YTWDDFLAMT RNTINSKKQR KVGSLRRNKG DLFIGDTEMV 300 NGGGSSHSDD GDVETSAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g43822.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250102 | 0.0 | AK250102.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf64c22, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574993.2 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
TrEMBL | A0A0Q3FMY8 | 0.0 | A0A0Q3FMY8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G43822.1 | 1e-160 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 | Representative plant | OGRP8022 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 1e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g43822.2.p |
Entrez Gene | 100846738 |