PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g41297.1.p

Common Name

BRADI_3g41297, LOC100840328

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

M-type_MADS

Protein Properties

Length: 204aa MW: 23543.5 Da PI: 5.4605

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g41297.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.7	9.7e-26	38	86	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+ + rqv fskRr g++KKA+ELSvLCd+eva+i+fs+ g+ly + Bradi3g41297.1.p 38 RIEDRTSRQVRFSKRRSGLFKKAFELSVLCDVEVALIVFSPAGRLYPFV 86 8*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.7E-33	29	88	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.072	29	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.82E-33	31	98	No hit	No description
SuperFamily	SSF55455	1.19E-27	31	104	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-26	31	51	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-25	38	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-26	51	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-26	66	87	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEERRMLQEQ QQEEAHGHGG KEEEGKRRKK RGKVELRRIE DRTSRQVRFS KRRSGLFKKA 60 FELSVLCDVE VALIVFSPAG RLYPFVSSES SVEEIFGRCR HLPNTIDLNI EVRDPRVDHD 120 IQIDLNEQAA PDPLSDLNHF ADWILEIDVN SMGMAELRRF EEIVSDALTV IKNNLRMKVS 180 QLTQTERNPQ EKANNLSSQE SEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	1e-16	31	89	3	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	33	RRKKRGKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g41297.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469336	0.0	KF469336.1 Brachypodium distachyon MADS-box transcription factor 42 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288324.1	1e-147	MADS-box transcription factor 7-like
TrEMBL	I1I8X7	1e-146	I1I8X7_BRADI; MADS-box transcription factor 42
STRING	BRADI3G41297.1	1e-147	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	3e-20	AGAMOUS-like 20

Link Out ? help Back to Top
Phytozome	Bradi3g41297.1.p
Entrez Gene	100840328

Publications ? help Back to Top
Wei B, et al. Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon. PLoS ONE, 2014. 9(1): p. e84781 [PMID:24454749]