PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38600.1.p
Common NameBRADI_3g38600, LOC100840637
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 267aa    MW: 28674.1 Da    PI: 4.6195
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1851104356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq+++Le  Fek++++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Bradi3g38600.1.p  51 KKRRLSVEQVRALEVSFEKENKLEPERKARLARDLGLQPRQVAIWFQNRRARWK 104
                       456899***********************************************9 PP
2HD-ZIP_I/II131.53.2e-4250142193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ekkrrls eqv++LE sFe+e+kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlE+dy+aL++++dal++++++L++++++L +e+k+
  Bradi3g38600.1.p  50 EKKRRLSVEQVRALEVSFEKENKLEPERKARLARDLGLQPRQVAIWFQNRRARWKTKQLERDYAALRQSFDALRADHDALRRDKDALLAEVKA 142
                       69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-1936108IPR009057Homeodomain-like
PROSITE profilePS5007117.11946106IPR001356Homeobox domain
SMARTSM003893.5E-1849110IPR001356Homeobox domain
CDDcd000861.34E-1751107No hitNo description
PfamPF000465.7E-1651104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-1953113IPR009057Homeodomain-like
PRINTSPR000317.9E-67786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000317.9E-686102IPR000047Helix-turn-helix motif
PfamPF021839.5E-17106147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRRRVANGAG GGPPVFPMVP SDDGFGVGME DDDADEDMAM CGGGGGGAGE KKRRLSVEQV  60
RALEVSFEKE NKLEPERKAR LARDLGLQPR QVAIWFQNRR ARWKTKQLER DYAALRQSFD  120
ALRADHDALR RDKDALLAEV KALKAKLEDG PAAAAASFSS VKEEPTAAAA AQGSSESDSS  180
EVLNNAAVLA PEDKTTPTPM HTAAKAKAVV PLEMGLYAVH GQQLLLKVED DEAAFLGDDD  240
AACGGFFADE QLPSLPWWTE PTDPWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581ERKARLA
298106RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682441e-143AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence.
GenBankAK1068181e-143AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence.
GenBankCT8294461e-143CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572308.10.0homeobox-leucine zipper protein HOX20
SwissprotA2YWC01e-102HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-102HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLI1I8010.0I1I801_BRADI; Uncharacterized protein
STRINGBRADI3G38600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.21e-37homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]