PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38430.1.p
Common NameBRADI_3g38430, LOC100841560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 305aa    MW: 32130 Da    PI: 7.2453
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.14.2e-3358113359
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                       +vrY+eClkNhA+ +GghavDGCgEfm++ ge+g+++al CaACgCHRnFHR+e+ee
  Bradi3g38430.1.p  58 SVRYRECLKNHAVGIGGHAVDGCGEFMAA-GEDGSIDALSCAACGCHRNFHRKESEE 113
                       69**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2443112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-2959111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-2960110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.59461110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.59E-20228300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-33232301IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26239295IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDFDEHDDGD GDEEMAPMPV SSSFEAPPPP QLLHPGLAHG VPVPKPGDSG GGRFRTPSVR  60
YRECLKNHAV GIGGHAVDGC GEFMAAGEDG SIDALSCAAC GCHRNFHRKE SEESPAAAAV  120
AAAAAGAITP YGAMPPLPGH HGQFSPYYRT PAGYLHHPQQ HHHHHQMAAA MAAGHAQRPL  180
ALPSTSHSGG RDEAGAADVD MSAMMLSPVV MGSMSMAGLS FGSGGSAGGP YGSGGSAGKK  240
RFRTKFSQEQ KERMQAFADR LGWRIQKHDE AAVQQFCEEV GVKRHVLKVW MHNNKHTLGK  300
KPLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-282402971875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632772e-78EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574645.10.0zinc-finger homeodomain protein 1
SwissprotQ6YXH51e-104ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLI1I7X80.0I1I7X8_BRADI; Uncharacterized protein
STRINGBRADI3G38430.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-31homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]