PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g36820.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 376aa MW: 41416.8 Da PI: 7.56 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.6 | 4.6e-11 | 40 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++ + ++k+ + g +g +e Aa+a++ a++k++g Bradi3g36820.9.p 40 AYRGVTRHRWTGRFEAHLWDkNTWTQsqRKKKGRQGAYGGEEAAARAYDLAALKYWG 96 69******************777744565566677999999**************98 PP | |||||||
2 | AP2 | 53.8 | 4.8e-17 | 139 | 190 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I ++ +k+ +lg++gt eeAa a++ a+ + +g Bradi3g36820.9.p 139 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYGTQEEAAMAYDIAAIEHRG 190 89****99***********99654...4**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-14 | 39 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-12 | 40 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-19 | 40 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 40 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-9 | 40 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 86 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.79E-22 | 139 | 200 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-17 | 139 | 200 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-11 | 139 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-17 | 140 | 199 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-26 | 140 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.714 | 140 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MAKQRTDSAG TDAAAVQLTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK 60 NTWTQSQRKK KGRQGAYGGE EAAARAYDLA ALKYWGRDTV LNFPLSNYDE EWKEMEGQSR 120 EEYIGSLRRK STGFSRGVSK YRGVARHHHN GKWEARIGRV YGNKYLYLGT YGTQEEAAMA 180 YDIAAIEHRG LNAVTNFDVS RYIDWHRRLC RDLGDNIITP LTNPTVDLEE AMAGDDDDGQ 240 FLLPSQATTP PSTSSALGLL LLSPRLKEVI EGSGAASAMA ASTSESSAAG SPPPSWSSSS 300 CSPSPPSPSH SPPETQQKQQ QQEYGASAAA ARCSFPDDVQ TYFGCEDGCA EVDTFLFGDL 360 SAYAAPMFQF ELLDV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g36820.9.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572236.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 2e-85 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | I1I7D4 | 0.0 | I1I7D4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36820.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 4e-84 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g36820.9.p |
Publications ? help Back to Top | |||
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