PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36820.6.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 379aa    MW: 41792.3 Da    PI: 7.5589
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36820.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-144099255
               AP2  2 gykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       y+GV++++++gr++A+++d  ++ +    k+ ++++lg +g +e Aa+a++ a++k++g
  Bradi3g36820.6.p 40 AYRGVTRHRWTGRFEAHLWDkNTWtQSqrkKKgRQVYLGAYGGEEAAARAYDLAALKYWG 99
                      69******************8888733565447*************************98 PP
2AP253.84.9e-17142193155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +g+W+A+I  ++    +k+ +lg++gt eeAa a++ a+ + +g
  Bradi3g36820.6.p 142 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYGTQEEAAMAYDIAAIEHRG 193
                       89****99***********99654...4**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-1639109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-1540108IPR001471AP2/ERF domain
PfamPF008472.5E-124099IPR001471AP2/ERF domain
SMARTSM003808.5E-2640113IPR001471AP2/ERF domain
PROSITE profilePS5103220.33640107IPR001471AP2/ERF domain
PRINTSPR003671.1E-54152IPR001471AP2/ERF domain
PRINTSPR003671.1E-589109IPR001471AP2/ERF domain
CDDcd000183.34E-22142203No hitNo description
PfamPF008471.3E-11142192IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17142203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-17143202IPR001471AP2/ERF domain
PROSITE profilePS5103217.714143201IPR001471AP2/ERF domain
SMARTSM003802.0E-26143207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAKQRTDSAG TDAAAVQLTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK  60
NTWTQSQRKK KGRQVYLGAY GGEEAAARAY DLAALKYWGR DTVLNFPLSN YDEEWKEMEG  120
QSREEYIGSL RRKSTGFSRG VSKYRGVARH HHNGKWEARI GRVYGNKYLY LGTYGTQEEA  180
AMAYDIAAIE HRGLNAVTNF DVSRYIDWHR RLCRDLGDNI ITPLTNPTVD LEEAMAGDDD  240
DGQFLLPSQA TTPPSTSSAL GLLLLSPRLK EVIEGSGAAS AMAASTSESS AAGSPPPSWS  300
SSSCSPSPPS PSHSPPETQQ KQQQQEYGAS AAAARCSFPD DVQTYFGCED GCAEVDTFLF  360
GDLSAYAAPM FQFELLDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36820.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572236.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN45e-90AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2D1L20.0A0A2K2D1L2_BRADI; Uncharacterized protein
STRINGBRADI3G36820.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-89AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]