PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36820.5.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 380aa    MW: 41858.4 Da    PI: 7.9066
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36820.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.7e-114099255
               AP2  2 gykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       y+GV++++++gr++A+++d  ++ +    k+ ++  l  +g +e Aa+a++ a++k++g
  Bradi3g36820.5.p 40 AYRGVTRHRWTGRFEAHLWDkNTWtQSqrkKKgRQGTLRAYGGEEAAARAYDLAALKYWG 99
                      69******************8888733565447*************************98 PP
2AP243.67.3e-14142194155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf.gtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +g+W+A+I  ++    +k+ +lg++ gt eeAa a++ a+ + +g
  Bradi3g36820.5.p 142 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYaGTQEEAAMAYDIAAIEHRG 194
                       89****99***********99654...4********556************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-1339109IPR016177DNA-binding domain
SMARTSM003804.1E-1840113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-1140108IPR001471AP2/ERF domain
PfamPF008472.7E-94099IPR001471AP2/ERF domain
PROSITE profilePS5103218.3640107IPR001471AP2/ERF domain
PRINTSPR003671.1E-54152IPR001471AP2/ERF domain
PRINTSPR003671.1E-589109IPR001471AP2/ERF domain
PfamPF008479.7E-9142193IPR001471AP2/ERF domain
CDDcd000182.50E-20142204No hitNo description
SuperFamilySSF541716.34E-15142204IPR016177DNA-binding domain
SMARTSM003801.3E-23143208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-15143203IPR001471AP2/ERF domain
PROSITE profilePS5103214.75143202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAKQRTDSAG TDAAAVQLTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK  60
NTWTQSQRKK KGRQGTLRAY GGEEAAARAY DLAALKYWGR DTVLNFPLSN YDEEWKEMEG  120
QSREEYIGSL RRKSTGFSRG VSKYRGVARH HHNGKWEARI GRVYGNKYLY LGTYAGTQEE  180
AAMAYDIAAI EHRGLNAVTN FDVSRYIDWH RRLCRDLGDN IITPLTNPTV DLEEAMAGDD  240
DDGQFLLPSQ ATTPPSTSSA LGLLLLSPRL KEVIEGSGAA SAMAASTSES SAAGSPPPSW  300
SSSSCSPSPP SPSHSPPETQ QKQQQQEYGA SAAAARCSFP DDVQTYFGCE DGCAEVDTFL  360
FGDLSAYAAP MFQFELLDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36820.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572236.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN45e-85AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2D1L40.0A0A2K2D1L4_BRADI; Uncharacterized protein
STRINGBRADI3G36820.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.25e-86AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]