PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36820.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 400aa    MW: 44045.8 Da    PI: 7.0561
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36820.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55e-114096255
               AP2  2 gykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GV++++++gr++A+++d  ++ +  ++k+ + g +g +e Aa+a++ a++k++g
  Bradi3g36820.4.p 40 AYRGVTRHRWTGRFEAHLWDkNTWTQsqRKKKGRQGAYGGEEAAARAYDLAALKYWG 96
                      69******************777744565566677999999**************98 PP
2AP230.21.2e-09139176142
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 
                       s+y+GV +++ +g+W+A+I  ++    +k+ +lg++ t   A
  Bradi3g36820.4.p 139 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYVT-LLA 176
                       89****99***********99654...4********99.666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1439106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-1240105IPR001471AP2/ERF domain
PfamPF008477.5E-94096IPR001471AP2/ERF domain
PROSITE profilePS5103219.12440104IPR001471AP2/ERF domain
SMARTSM003802.6E-1940110IPR001471AP2/ERF domain
PRINTSPR003671.2E-54152IPR001471AP2/ERF domain
PRINTSPR003671.2E-586106IPR001471AP2/ERF domain
CDDcd000183.57E-17139224No hitNo description
SuperFamilySSF541711.24E-5139175IPR016177DNA-binding domain
PfamPF008477.1E-5139175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-5140174IPR001471AP2/ERF domain
PROSITE profilePS5103212.246140222IPR001471AP2/ERF domain
SMARTSM003801.4E-15140228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-5197223IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-5197224IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAKQRTDSAG TDAAAVQLTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK  60
NTWTQSQRKK KGRQGAYGGE EAAARAYDLA ALKYWGRDTV LNFPLSNYDE EWKEMEGQSR  120
EEYIGSLRRK STGFSRGVSK YRGVARHHHN GKWEARIGRV YGNKYLYLGT YVTLLASSAE  180
QDRVYLHAGH VFEFGGTQEE AAMAYDIAAI EHRGLNAVTN FDVSRYIDWH RRLCRDLGDN  240
IITPLTNPTV DLEEAMAGDD DDGQFLLPSQ ATTPPSTSSA LGLLLLSPRL KEVIEGSGAA  300
SAMAASTSES SAAGSPPPSW SSSSCSPSPP SPSHSPPETQ QKQQQQEYGA SAAAARCSFP  360
DDVQTYFGCE DGCAEVDTFL FGDLSAYAAP MFQFELLDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36820.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317617.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN48e-80AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2D1L70.0A0A2K2D1L7_BRADI; Uncharacterized protein
STRINGBRADI3G36820.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.28e-79AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]