PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g36820.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 403aa MW: 44421.2 Da PI: 7.0559 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.5 | 1.9e-14 | 40 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++ + k+ ++++lg +g +e Aa+a++ a++k++g Bradi3g36820.3.p 40 AYRGVTRHRWTGRFEAHLWDkNTWtQSqrkKKgRQVYLGAYGGEEAAARAYDLAALKYWG 99 69******************8888733565447*************************98 PP | |||||||
2 | AP2 | 30.2 | 1.2e-09 | 142 | 179 | 1 | 42 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 s+y+GV +++ +g+W+A+I ++ +k+ +lg++ t A Bradi3g36820.3.p 142 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYVT-LLA 179 89****99***********99654...4********99.666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.38E-16 | 39 | 109 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-15 | 40 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 40 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-26 | 40 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 40 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 89 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-5 | 142 | 178 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-5 | 142 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.15E-17 | 142 | 227 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.3E-5 | 143 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.246 | 143 | 225 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-15 | 143 | 231 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-5 | 200 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-5 | 200 | 227 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence Send to blast |
MAKQRTDSAG TDAAAVQLTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK 60 NTWTQSQRKK KGRQVYLGAY GGEEAAARAY DLAALKYWGR DTVLNFPLSN YDEEWKEMEG 120 QSREEYIGSL RRKSTGFSRG VSKYRGVARH HHNGKWEARI GRVYGNKYLY LGTYVTLLAS 180 SAEQDRVYLH AGHVFEFGGT QEEAAMAYDI AAIEHRGLNA VTNFDVSRYI DWHRRLCRDL 240 GDNIITPLTN PTVDLEEAMA GDDDDGQFLL PSQATTPPST SSALGLLLLS PRLKEVIEGS 300 GAASAMAAST SESSAAGSPP PSWSSSSCSP SPPSPSHSPP ETQQKQQQQE YGASAAAARC 360 SFPDDVQTYF GCEDGCAEVD TFLFGDLSAY AAPMFQFELL DV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g36820.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317617.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 2e-84 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2D1P2 | 0.0 | A0A2K2D1P2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36820.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79700.2 | 3e-84 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g36820.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|