PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g36820.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28303.2 Da PI: 4.6629 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.4 | 4.1e-14 | 25 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf.gtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I ++ +k+ +lg++ gt eeAa a++ a+ + +g Bradi3g36820.2.p 25 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYaGTQEEAAMAYDIAAIEHRG 77 89****99***********99654...4********556************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.83E-22 | 25 | 87 | No hit | No description |
Pfam | PF00847 | 5.5E-9 | 25 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-15 | 25 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-23 | 26 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 26 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.75 | 26 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEGQSREEYI GSLRRKSTGF SRGVSKYRGV ARHHHNGKWE ARIGRVYGNK YLYLGTYAGT 60 QEEAAMAYDI AAIEHRGLNA VTNFDVSRYI DWHRRLCRDL GDNIITPLTN PTVDLEEAMA 120 GDDDDGQFLL PSQATTPPST SSALGLLLLS PRLKEVIEGS GAASAMAAST SESSAAGSPP 180 PSWSSSSCSP SPPSPSHSPP ETQQKQQQQE YGASAAAARC SFPDDVQTYF GCEDGCAEVD 240 TFLFGDLSAY AAPMFQFELL DV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g36820.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106769 | 6e-84 | AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence. | |||
GenBank | HQ858820 | 6e-84 | HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572236.1 | 1e-140 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
TrEMBL | A0A2K2D1L4 | 0.0 | A0A2K2D1L4_BRADI; Uncharacterized protein | ||||
TrEMBL | A0A2K2D1L6 | 0.0 | A0A2K2D1L6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36820.1 | 1e-139 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 4e-47 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g36820.2.p |