PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g36670.1.p

Common Name

BRADI_3g36670

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 282aa MW: 31175.6 Da PI: 6.2806

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g36670.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.3	7.1e-28	7	83	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +yfF+kr+ +y++g r++r+t+ gyWk+tgkdk+v+++ +++lvg+kktLvf++grap+gekt+Wvmhey l Bradi3g36670.1.p 7 GDECYYFFCKRSIRYPSGARARRSTAGGYWKSTGKDKDVHCSreSNRLVGTKKTLVFHRGRAPRGEKTSWVMHEYML 83 344569********************************98666677*************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.863	1	109	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-32	6	109	IPR003441	NAC domain
Pfam	PF02365	2.1E-13	11	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MTAGSGGDEC YYFFCKRSIR YPSGARARRS TAGGYWKSTG KDKDVHCSRE SNRLVGTKKT 60 LVFHRGRAPR GEKTSWVMHE YMLLAGQRSR NACSRADQGE WVICRVFVKK PPSDHRTLER 120 DLGQGEALHG QTSPGHLLPM DSDGCNGEEA AERAASQVLS DDPWDTNNRA MTSHENDALV 180 HHVDPSLIVD RPSCASPFWP LYDDDQLGPY CSTSTLHILQ QRSSLISATD DLPELLEYGG 240 YDIPKRGASP GSELTSSSEA EISYISVVPL HLDESYWNFG C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-24	7	110	69	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-24	7	110	69	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-24	7	110	69	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-24	7	110	69	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-24	7	110	72	169	NAC domain-containing protein 19
3swm_B	2e-24	7	110	72	169	NAC domain-containing protein 19
3swm_C	2e-24	7	110	72	169	NAC domain-containing protein 19
3swm_D	2e-24	7	110	72	169	NAC domain-containing protein 19
3swp_A	2e-24	7	110	72	169	NAC domain-containing protein 19
3swp_B	2e-24	7	110	72	169	NAC domain-containing protein 19
3swp_C	2e-24	7	110	72	169	NAC domain-containing protein 19
3swp_D	2e-24	7	110	72	169	NAC domain-containing protein 19
4dul_A	2e-24	7	110	69	166	NAC domain-containing protein 19
4dul_B	2e-24	7	110	69	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g36670.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024316300.1	0.0	NAC domain-containing protein 46
TrEMBL	A0A2K2D1J3	0.0	A0A2K2D1J3_BRADI; Uncharacterized protein
TrEMBL	I1I7B7	0.0	I1I7B7_BRADI; Uncharacterized protein
STRING	BRADI3G36670.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	2e-35	NAC domain containing protein 46

Link Out ? help Back to Top
Phytozome	Bradi3g36670.1.p