PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34200.1.p
Common NameBRADI_3g34200, LOC100836477
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 707aa    MW: 76240.2 Da    PI: 6.7157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12529574454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Bradi3g34200.1.p 529 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 574
                       799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5152234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39525574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-18528596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-14528575No hitNo description
PfamPF000104.7E-10529574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18529596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15531580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASAA DLPTFPWGAA AATPPPPAAV MPQQPAFNQD TLQQRLQAII  60
EGSRETWTYA IFWQSSTDAG AGASLLGWGD GYYKGCDDAD KRARQQPTPA SAAEQEHRKR  120
VLRELNSLIA GGGAAAPDEA VEEEVTDTEW FFLVSMTQSF PNGMGLPGQA LYTRQPTWIA  180
SGLASAPCER ARQAYTFGLR TMVCIPVGTG VLELGATEVI FQTADSLGRI RSLFNLNGGG  240
GGGGAGSSWP PVAPHQQHGG DQAETDPSVL WLTDAPVGDM KESPSVEISV SKPPPPPQIH  300
HFENGSTSTL TENAGPSLHA HQQPATLAPA APPRQNQHPH QLQLQHQQSQ QQQQQQQGPF  360
RRELNFSDFA TNASVTVTPP FFKPESGEIL NFGADSTSRR NPSPAPPAAA ASLTTAPGSL  420
FSQHTATVTA PTNEAKNNPK RSMEATSRAS NTNHHPSATA NEGMLSFSSA PTTRPSTGTG  480
APAKSESDHS DLEASVREVE SSRVVPPPEE KRPRKRGRKP ANGREEPLNH VEAERQRREK  540
LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELRGKMTA LESDKDTLHS QIEALKKERD  600
ARPVAPLSGV HDSGPRCHAV EIEAKILGLE AMIRVQCHKR NHPAAKLMTA LRELDLDVYH  660
ASVSVVKDIM IQQVAVKMPN RVYSQDQLNA ALYSRLAEPG APVPIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-65442371195Transcription factor MYC3
4rqw_B4e-65442371195Transcription factor MYC3
4rs9_A4e-65442371195Transcription factor MYC3
4yz6_A4e-65442371195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510518KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578160.0AK357816.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062G16.
GenBankAK3598130.0AK359813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1103K10.
GenBankAK3604650.0AK360465.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574381.10.0transcription factor MYC2
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLI1I6F30.0I1I6F3_BRADI; Uncharacterized protein
STRINGBRADI3G34200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Representative plantOGRP37331224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-140bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]