PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g30410.1.p

Common Name

BRADI_3g30410, LOC100822565

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

YABBY

Protein Properties

Length: 316aa MW: 33150.4 Da PI: 8.5078

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g30410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	79.1	1.4e-24	50	99	6	55
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 seq+Cyv+C fC+t+l+vsvPs+sl+k+vtvrCGhC+sll+vn++ Bradi3g30410.1.p 50 ESEQLCYVHCHFCDTVLVVSVPSSSLLKTVTVRCGHCSSLLTVNMRGLLF 99 79******************************************987763 PP
2	YABBY	135.1	8.7e-42	205	274	102	170
YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Bradi3g30410.1.p 205 GKGGKEPSPRTNPiVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 274 555677789988889*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-64	50	274	IPR006780	YABBY protein
SuperFamily	SSF47095	5.76E-8	212	267	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.8E-4	223	266	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSSSSSSGAS VAASFTPVSQ QQMAAVENLP PPPPQQQQLA VQEEAPPGSE SEQLCYVHCH 60 FCDTVLVVSV PSSSLLKTVT VRCGHCSSLL TVNMRGLLFP TTTATPAASA VTTLTDISSP 120 PPTTAGGSHH GQQFQYSSPA HSLNLAPGPG GNIHNPPRHS LSLLDEISST NPASLQLLEQ 180 HGGGMVAAAR NAAAPAAAAA PPAAGKGGKE PSPRTNPIVN RPPEKRQRVP SAYNRFIKDE 240 IQRIKAGNPD ISHREAFSAA AKNWAHFPHI HFGLMPDHQG LRKTSLLPLP QDHQRKDVLL 300 KDGLYAAANM GVAPY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g30410.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY330228	1e-124	AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574170.1	0.0	protein YABBY 3
Swissprot	Q8L556	3e-95	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	I1I594	0.0	I1I594_BRADI; Uncharacterized protein
STRING	BRADI3G30410.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121
Representative plant	OGRP13003	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-46	YABBY family protein

Link Out ? help Back to Top
Phytozome	Bradi3g30410.1.p
Entrez Gene	100822565

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]