PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g30033.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 300aa    MW: 32409.7 Da    PI: 4.4786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g30033.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-094689247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      g++T+ E+ ++ +   + G+  W+ Ia+ ++ gRt+  +k++w++ 
  Bradi3g30033.2.p 46 GNFTAAEERIICEMYSKRGSC-WSIIAAVLP-GRTDLAIKNYWNST 89
                      89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.704139IPR017877Myb-like domain
SuperFamilySSF466891.49E-192594IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-102552IPR009057Homeodomain-like
PROSITE profilePS5129419.0924094IPR017930Myb domain
SMARTSM007177.9E-104492IPR001005SANT/Myb domain
PfamPF002492.4E-84689IPR001005SANT/Myb domain
CDDcd001673.08E-74790No hitNo description
Gene3DG3DSA:1.10.10.606.5E-155391IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVMAVGKSSL LSSCLKLSWC IAGLQRCGRS CRSRWLNYLR PGLKHGNFTA AEERIICEMY  60
SKRGSCWSII AAVLPGRTDL AIKNYWNSTL KKRFPRAARS RRRTSSDSSD DTGPDLTLVV  120
YNDDESTSTT TAPDLALIVY NEEEESAAEP ELPLVVYNEE EESAAAPELP LVLYNEEESA  180
TAGSSSSHSS GVDKPVAVLS GSQLQAGLQP PPPICAPVQA GAQPSPPPVT LVKEELISAP  240
VRTSPVDYHQ TGEEMDVGWA LMSPMPLSYM DPDLARIIGI DLPPIAGFED IGSFLSFFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-18269340107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g30033.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317185.10.0myb-related protein 330
TrEMBLA0A2K2D0420.0A0A2K2D042_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-30myb domain protein 84