PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g22290.2.p

Common Name

BRADI_3g22290, LOC100832165

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 308aa MW: 33948.7 Da PI: 6.1834

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g22290.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.6e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Bradi3g22290.2.p 47 RQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLKIMGVPGLTIYHVKSHLQKYRL 101 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.36	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-32	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-18	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-26	48	102	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-9	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	5.3E-24	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MYQPNQISSI GHNHGSPAAH EQMELGGTSM SMVPCNGGND NPNMASRQRL RWTNELHDRF 60 VEAVTQLGGP DRATPKGVLK IMGVPGLTIY HVKSHLQKYR LAKYIPDPSA SDDNKAEERD 120 PGDLLAALEG SSGMPISEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LQKIIEEQQR 180 ITAAGPSRAT SSDQMPDSER TNPSTPGLTS ESRVHGSTKN NKNQIELTKS SPNDDPLACR 240 QPLTPDCSRP SSPTLSPEHE RPVKRQRGSD PVDDTSFDDD QFVLPRTIFE SSTATEFQDC 300 SSPYSGH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g22290.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573787.1	0.0	myb family transcription factor PHL7
Refseq	XP_024317461.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	2e-79	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	I1I394	0.0	I1I394_BRADI; Uncharacterized protein
STRING	BRADI3G22290.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi3g22290.2.p
Entrez Gene	100832165